dupd1 (LOC108426746)


Basic Information

Item Value
gene id dupd1
gene name LOC108426746
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13893420 ~ 13899909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684664.1
GTGTCCAGAGGGAGCATTCGAGAGCTGCTACTGCTGAAGCTGAAACTGAAGTTTCCTCAGAAACGGGGCAGCTCTCGGGCTCGTGGCTGATGAGCACAGAGCTGAAAAGGAAGATGAAATCGAATGCTTCAAAGCAGAGCACAACAAAGAACCCTTATAAAGCAGTGCAGTGTGATCCAGACAGTGAGTACATCACACCTGGGGTATTTGAGCTGGAGAAACTGTTCTGGCACGGCTCGGGGGCAGCCTACACCCACGTCAATGAAGTCTGGCCTAGCGTCTATATCGGAGATGAGAAAACAGCTCTAGAGCGCCACAACCTGGAGAAGACAGGAATAACGCACATCCTCAATGCTGCCGAGGGAAAGTGGAATAATGTAGCCACAGGTCCAGACTACTACCACGGCATGAACATCGATTACTATGGAGTCGAGGCAGAAGACATTCCGACTTTCAACCTCTCTCAGTTTTTCGACCCAGCGGCTCAATTTATTGACCACGCACTCAGCAAGCCAGAGAGTAAGCTGCTGGTGCACTGTGTAATGGGACGAAGCCGCTCAGCTACCTTGTTTCTGGCTTATTTAATGATCTACAAGAACATGACTGTCGTTGAAGCCATTGAGCATGTGAAAGAACGCCGCTGCATTCTGCCCAACAGAGGTTTTCTGAAGCAGCTGCGAAACCTGGATGTTCAACTGCAAGAAGAAAAGCAGACAACAAAGAACGGACACTCGTAACTTAACGAGACTTCAAAAAGTAGTGATGTAACTGTACTGAAAAGTCCAGTCAGTACAGAATACTGCAAAAACAAAGAGGATCCTGTCTCCCACTTTACATCTACAAAGAGGCCCAGCTAGGTTGGAgtgtacagtgagtggacacagtgtttaaaaacttcagcagcactgctgttttgtttgtgtgttgtacTGGTGCAGATGGATCAAAACCATGTCAGTTTTACAGAAGTGCTGAAAATGATCTAATACCCAAATAATAgctattgaagaacaggatgaaaggaGGTTAACCAACTAGAAAGATCtatgtaattttgtaattattaagacaagaataataatataataatattctgaCTGGCCTTGTGTATATGCTTGTCACACTACACCATGAACAAACACGATATTGGACAGAAAGACAAGAGAACAACTGCAGTACAAAAACAGTCAACACTCAGGTTTAAGTCTGTCAGTGGCtcatcataatttattttctgctaAAATGTACAGCATTTAAGTGACCGACTAAAAAGGTAACTCATAAATACAGGACTGTTGCTCCATTAATTAGTACAGTCAGATAATCCCTCTTACGTCAAACTGCCATTCTGTACAGGTACAAAGGCTACAAAATAAGCTATACAAACAGACACCAATACAATT

Function

NR:

description
PREDICTED: uncharacterized protein LOC108426746

GO: NA

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684664.1 True 1403 mRNA 0.43 4 13893420 13899909

Neighbor

gene id symbol gene type direction distance location
LOC111195973 dusp13a,LOC108426746,LOC107725429,LOC107666542,LOC108263393,LOC107743611,LOC107601810 coding upstream 6108 13881732 ~ 13887312 (+)
LOC103035759 zgc:153981,LOC103035759,LOC108426808,LOC108262675,LOC107725455,LOC107666543,LOC107601871,LOC107743612 coding upstream 17754 13870201 ~ 13875666 (+)
LOC103036078 LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 coding upstream 23289 13866821 ~ 13870131 (+)
LOC103040224 NA coding upstream 63028 13799778 ~ 13830392 (+)
adam8 NA coding upstream 154451 13724592 ~ 13738969 (+)
ap3m1 LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC108263184,LOC107666495 coding downstream 321997 14221906 ~ 14228630 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325,LOC107743510 coding downstream 431288 14331197 ~ 14339931 (+)
calhm3 calhm3,LOC107559321,LOC107578949,LOC102205420,LOC102305682 coding downstream 464772 14364681 ~ 14367185 (+)
LOC103038684 LOC103038684,LOC108426744 coding downstream 467395 14367304 ~ 14372827 (+)
calhm2 calhm2 coding downstream 473922 14373831 ~ 14379174 (+)
G216310 NA non-coding upstream 58187 13830829 ~ 13835233 (+)
G216307 NA non-coding upstream 101762 13790670 ~ 13791658 (+)
LOC111195921 NA non-coding upstream 116614 13775106 ~ 13776806 (+)
G216303 erlin1,LOC108263345,LOC108426813,LOC103476975,LOC103134047,LOC106944811 non-coding upstream 123986 13766537 ~ 13769434 (+)
G216284 NA non-coding upstream 153611 13739549 ~ 13739809 (+)
G216339 NA non-coding downstream 163041 14062950 ~ 14063241 (+)
G216341 NA non-coding downstream 251573 14151482 ~ 14231704 (+)
G216344 NA non-coding downstream 308530 14208439 ~ 14258450 (+)
G216354 LOC108426801,LOC107726962 non-coding downstream 355498 14255407 ~ 14265349 (+)
G216355 NA non-coding downstream 359434 14259343 ~ 14262684 (+)
spef1 spef1 other upstream 143114 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 409049 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 577258 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 578220 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 580933 13308037 ~ 13312487 (+)
gsto1 gsto1 other downstream 442323 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 822491 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3104632 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 3249433 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 4104344 18004253 ~ 18039352 (+)

Expression


Co-expression Network