calhm2 (calhm2)


Basic Information

Item Value
gene id calhm2
gene name calhm2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14373831 ~ 14379174 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684679.1
GGTTCCTCTACTCTGTCCATAAGTTAGCTTGCCCTGGGAGGACGTGTTAGAGCTTGTCTAGGGGTACTTTGAGAATCAGTTTACATGGAGATTCTTCAGCATTGTCCTTTCTGGATTTCATCCAATAGTGGTTCCTGCTGAGTCTTGCTCACATAGCGATGTTTGAGACTTATTTTTTCTTATgatttcaagattttttttattatcagcaCACAACCACCACAAGGCACTAGCACCGACTGAAACAGAAGGAGGATTAAATGGCTGCACTTTTGGCAGAACATTTCAAAtttgtttctctcttcttcAAGAGCAAGGATGTCGTGATCTTCAATGGCCTCATAGCCCTGGGCACAGTGGCCAGTCAGACGGCATATAACATTTTTGCCTTTGAATGTCCATGCTCTCCAGAGAGGAATTACCTGTACGGGCTGGCAGCTATCGGTGTACCTGCGCTGGCTTTCTTCATCATTGGAGTCATGCTCAATCGAAATACATGGGACCTTGTGTCAGAGTGTCGCCTCAGAAGATGCCAGAAGTTCTCTGGGGCAGCCGCCTTCGCTCTGCTGGGGTCGATAGTGGGCCGAGCATTAGTGGCCCCTGTTACCTGGTCTGTCCTCTCACTCCTCAGAGGGGAGGCCTATGTGTGTGCCATCAGCGAGTTTGTAGACCCTCAGTCCATGGAGAACTTTCCGGTCACTTACCAGAACCAGAAAATCATGGCCCGCTTTCCATGTAAAGATGTGCCTGCTGAGGTGTTGCCATTCTATGCAGAAATTCACCGTCGACTCAAGTATGAATCTCAGCTGCTGGGCTGGCTGTTGGTGGGTGTCATCTCCATTGGCGTGTTTTTAATGCTGTGCCTGAAGCACTGCTGCTCTTCCCTGGGCTACCAGCAGGAGGCATACTGGGCCAGCTACCGCTCCAATGAGCAAACTCTCTTCCAGCGCACTGCTGATGCTCATTCTAAAATCCAAGCTGCTGAGAGTGTAAAGAGCTTTTTTGGGTTTGTGGCCCTTGAGAGTGAAGAAAAAGACCTTCTGGCAAAGTGCCAGGGAGCCAAAAGTGATATTCCCAGTATGGAGTGGGGTCGCATCACAGGAGCATACTTGTACAGGGAGAATAAAGGAGCTCCACTCTACAGTCGCCTCAATAAATGGTCCAGTTACAAAAAGGAAGGCAACAATAAGGCCATTGCAGAAGAGATGGACATGTTATGCTAAAATGTTACACTGTGacacttttacacattttctgtAGATAACTGTTCTTTGAACTTTGAcatctttattaattattaattattaaatatatgtgcTTGTTACTGATAATGTGTTTAATACTCAATTCATACCTGAttgaatttatattttttacactcttGGGTTTTTGGTGGGATCTTAGTGATTACAACATGTTAGTTATGTGTCAGCTATTCTCTCAGGGCTAGATGTAAATATATGCAAACCAAATGCTGTTCAAATAAACTGACTTCTTTGTTTCCAACAGTG

Function

symbol description
calhm2 Predicted to enable cation channel activity. Involved in positive regulation of apoptotic process. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: calcium homeostasis modulator protein 2

GO: NA

KEGG:

id description
K19739 CALHM2; calcium homeostasis modulator protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684679.1 True 1511 mRNA 0.45 2 14373831 14379174

Neighbor

gene id symbol gene type direction distance location
LOC103038684 LOC103038684,LOC108426744 coding upstream 1004 14367304 ~ 14372827 (+)
calhm3 calhm3,LOC107559321,LOC107578949,LOC102205420,LOC102305682 coding upstream 6646 14364681 ~ 14367185 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325,LOC107743510 coding upstream 33900 14331197 ~ 14339931 (+)
ap3m1 LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC108263184,LOC107666495 coding upstream 145201 14221906 ~ 14228630 (+)
dupd1 LOC108426746 coding upstream 473922 13893420 ~ 13899909 (+)
LOC103031627 LOC108426796,LOC107559326,LOC107655434,LOC107743509,LOC105911640,LOC106576688,LOC103353499 coding downstream 3538 14382712 ~ 14395068 (+)
atoh7 atoh7,LOC108426756,LOC107666420,LOC107726941,LOC107601814,LOC107655428,LOC107743508 coding downstream 30921 14410095 ~ 14411423 (+)
LOC103031316 LOC108426755 coding downstream 39795 14418969 ~ 14430741 (+)
bag3 bag3 coding downstream 63502 14442676 ~ 14450871 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding downstream 74842 14454016 ~ 14479060 (+)
G216410 NA non-coding upstream 19012 14353101 ~ 14354819 (+)
G216408 NA non-coding upstream 21918 14351568 ~ 14351913 (+)
G216354 LOC108426801,LOC107726962 non-coding upstream 108482 14255407 ~ 14265349 (+)
G216355 NA non-coding upstream 111147 14259343 ~ 14262684 (+)
G216344 NA non-coding upstream 115381 14208439 ~ 14258450 (+)
G216435 NA non-coding downstream 23411 14402585 ~ 14403464 (+)
G216437 tial1 non-coding downstream 52935 14432109 ~ 14474597 (+)
G216441 mcmbp,LOC107743503,LOC107559330,LOC107655439,LOC107726945 non-coding downstream 108585 14487759 ~ 14488523 (+)
G216505 NA non-coding downstream 234972 14614146 ~ 14616451 (+)
G216508 NA non-coding downstream 238144 14617318 ~ 14618083 (+)
gsto1 gsto1 other upstream 26498 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 623525 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 889460 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 1057669 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 1058631 13315112 ~ 13315200 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 343226 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 2625367 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 2770168 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 3625079 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 3932719 18311893 ~ 18317228 (+)

Expression


Co-expression Network