CI01000009_02251416_02262823 (ERCC1)


Basic Information

Item Value
gene id CI01000009_02251416_02262823
gene name ERCC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2251161 ~ 2262823 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02251416_02262823.mRNA
ACTAAATCAATAAAAACACATGCACGATCTACCAACTTGATGAGCTTTCACACCTTATGCAAGTTTGCCCATAACATGGTGTTGATGACTCAAATCAAACTGATGCATCATGTTGCCCACCGCAAGTCTACATATACCACTCGATCAGTGGCATCGTTGTTTAAAGCCAAAGATGGTCAAGTAGAGGCCTCATCTGTTCCAGCTCCTGGTCAACCACTGTCCTATGCAGAGTTCGTTGTTCAGAGCAAAAACAGGGGGCTTCAGGGACCAGCTCATGGATCAGAGAAACAAATATCTGCTGCCCAAAGTAGGAACGATGCTGCAGGACAAAGCAGTGTAAACACAGCTGGAAGTGGCTCAATTAGTACATCATTCACAGACTCAGGGGAAAAAAACAAGACTGAACAGCAGGGACCAGCAGAGGTACCAACAGAAGATCAGACAAAAGAGGAAGGTCAGAGTTTGGAGAGTTGTATCATTCCTCCTCATCTCTTAGGATCCGGGAACAGTATTATTGTCAGTCCTCGACAGAGAGGCAACCCTATCCTAAAGTTTGTGAGAAATGTTCCTTGGGAGTTTGGAGAAGTGGTGCCAGACTATGTTTTGGGGCGGACAACTTGTGCTCTTTTTCTCAGTGTGCGTTACCATAATCTGAACCCAAACTACATCCATGAGCGTCTGAAACAGCTGGGACAGAGTTTCACACTCAGAGTGTTGCTCGTCCAAGTCGATGTGAAAGACCCTCATCATGCACTGAAAGAGCTTGCTCGAATATGCATCATGGCTGACTGTACCCTCATTTTGGCCTGGAGTCCTGAGGAAGCAGGTCGTTACCTTGAGACATATAAATCATACGAGAAGAAACCTGCAGATCTTCTGAAAGAACAAGTGGAGAAAAATTACCTGTCCCAGTCTTTGGAGGGCATCATTAAGGCTTCTAAGGAGGAACTAGTTTTGTGCCCTGGACTCGGTCCGCAGAAGGCAAGAAGGCTTTATGATATACTGCACCAACCCTTCGTAAAGACCAAGAAGAATGAAAGCGGATAAATCCAAACTGTGACTCACAAAATCACTGTGTCTTAGAACATATTCTTTGGTCTATAATGATCTTGGCCTGTAAGTGGGGCATGAACAGCCTCTAAAAATCCAAAATGCAGTGGTTTATTTGTTAGTTTTGTTGTGGGGATTTTTTTTTTTTTTTTGGTGGGGGTATTTATTTTTTGTATGTAACCTGATTTTGTAATTCTGTAAAAAAAAAAAAATCCAGTTTTTTTAATGGGTGTTTATGAAAATTTAAATAAA

Function

symbol description
ercc1 Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of ERCC4-ERCC1 complex and nucleotide-excision repair factor 1 complex. Human ortholog(s) of this gene implicated in several diseases, including bone cancer (multiple); carcinoma (multiple); cerebrooculofacioskeletal syndrome 4; hematologic cancer (multiple); and transient cerebral ischemia. Orthologous to human ERCC1 (ERCC excision repair 1, endonuclease non-catalytic subunit).

NR:

description
Excision repair cross-complementing rodent repair deficiency, complementation group 1

GO:

id name namespace
GO:0000014 single-stranded DNA endodeoxyribonuclease activity molecular_function

KEGG:

id description
K10849 ERCC1; DNA excision repair protein ERCC-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02251416_02262823.mRNA True 1302 mRNA 0.42 8 2251161 2262823

Neighbor

gene id symbol gene type direction distance location
CI01000009_02247894_02249252 NA coding downstream 1875 2247774 ~ 2249286 (-)
CI01000009_02239426_02240738 NA coding downstream 10365 2239421 ~ 2240796 (-)
CI01000009_02237301_02238365 NA coding downstream 12289 2237301 ~ 2238872 (-)
CI01000009_02228671_02232977 DNAJB11.S, DNAJB11 coding downstream 18184 2227624 ~ 2232977 (-)
CI01000009_02167959_02200058 SATB2 coding downstream 51103 2167363 ~ 2200058 (-)
CI01000009_02286191_02288884 OLIG1 coding upstream 23337 2286160 ~ 2288981 (-)
CI01000009_02300395_02301213 OLIG2 coding upstream 37286 2300109 ~ 2301637 (-)
CI01000009_02327693_02335035 NA coding upstream 64870 2327693 ~ 2335035 (-)
CI01000009_02352214_02356619 NA coding upstream 89391 2352214 ~ 2356841 (-)
CI01000009_02358636_02361913 HPX coding upstream 95647 2358470 ~ 2361949 (-)
G52342 NA non-coding downstream 35626 2214952 ~ 2215535 (-)
G52338 NA non-coding downstream 93415 2157412 ~ 2157746 (-)
G52230 NA non-coding downstream 155109 2094368 ~ 2096052 (-)
G52222 NA non-coding downstream 259175 1990621 ~ 1991986 (-)
G52274 NA non-coding downstream 275333 1974202 ~ 1975828 (-)
G52371 NA non-coding upstream 125491 2388314 ~ 2388539 (-)
G52328 NA non-coding upstream 136991 2399814 ~ 2400894 (-)
G52330 NA non-coding upstream 138212 2401035 ~ 2401380 (-)
G52378 NA non-coding upstream 164426 2427249 ~ 2427848 (-)
G52379 NA non-coding upstream 185543 2448366 ~ 2451640 (-)
G52098 NA other downstream 843534 1401932 ~ 1407627 (-)
G52410 NA other upstream 288901 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 620865 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 998380 3261038 ~ 3262843 (-)
G52828 NA other upstream 1954597 4217420 ~ 4231469 (-)
G53515 NA other upstream 3239572 5502395 ~ 5505248 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037954 ercc1 coding NC_007120.7 CM002893.2 32674676 ~ 32684008 (-)