LOC111195974



Basic Information


Item Value
gene id LOC111195974
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14639866 ~ 14640543 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022684680.1
GCAGCATGTCCCCCAAGTGCGCATCCGTGGAAAGAAGTGGCACGTGCGCATCCCGCGCGCAATCACCCTACGGTTCGACAACAGAGCtctcagaaagagagatgaaCTCCTCCTCCAGTGATTTTGACCCGAGCAACGACGAAGACTCGCCCGCTTCTACCGGAGGGAGAGCGAGGAAAACGCGCGCGAGGACAAAGTGGTCATCAGGCGCGTCCAGGCCCCTCGGGAACCGCAGAACAAAAGCCAACGACCGCGAACGGCACCGCATGCACAACCTCAACTCCGCCCTGGACGCGCTGAGGAGCGTGCTGCCCACCTTCCCCGACGACGCCAAGCTGACGAAAATCGAGACGCTGCGATTTGCGCACAATTACATCTGGGCTCTTACCGAAACACTGCGAATCTCTGACCACACCCGGCCCCCTGCAGAGCCTGCGGAGGGTGTTGATGCGCAGAGCGGAGTCTGGCACGGAGCGCGCGGGGCGCACGCGGCGCAGGGACTGCACGCGGACGCTTTACTGCGCGAGGCGGACTGCAGTTTTCAGGACAGTCTGGCGCTCGCTTTAAATGAAGATGCGTTGTTTCTGAGTAACGGATGGACTTGTTTCTCAAAGTCACACAGATCCAGCATGAATGATTACAGACTATAAAGAGAATTTGGACATCTGTAAATATAAC

Function


GO: NA

KEGG:

id description
K08028 NEUROG3; neurogenin 3

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022684680.1 True 678 mRNA 0.58 1 14639866 14640543

Neighbor


gene id symbol gene type direction distance location
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 coding upstream 27298 14608175 ~ 14612568 (+)
sec23ip sec23ip,LOC107655440,LOC107666414,LOC107743502,LOC107601884 coding upstream 134020 14493853 ~ 14505846 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 160806 14454016 ~ 14479060 (+)
bag3 bag3 coding upstream 188995 14442676 ~ 14450871 (+)
LOC103031316 LOC108426755 coding upstream 209125 14418969 ~ 14430741 (+)
fancl fancl,LOC107585345 coding downstream 876195 15516738 ~ 15542681 (+)
LOC103023506 LOC103023506 coding downstream 1209309 15849852 ~ 15854753 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 coding downstream 1254062 15894605 ~ 16015675 (+)
LOC103022884 NA coding downstream 1376857 16017400 ~ 16022839 (+)
rin2 LOC108442550,LOC107673857 coding downstream 1384277 16024820 ~ 16086964 (+)
G216507 NA non-coding upstream 9071 14623660 ~ 14630795 (+)
G216508 NA non-coding upstream 21783 14617318 ~ 14618083 (+)
G216505 NA non-coding upstream 23415 14614146 ~ 14616451 (+)
G216441 mcmbp,LOC107743503,LOC107559330,LOC107655439,LOC107726945 non-coding upstream 151343 14487759 ~ 14488523 (+)
G216437 tial1 non-coding upstream 165269 14432109 ~ 14474597 (+)
G216520 NA non-coding downstream 2375 14642918 ~ 14645082 (+)
G216523 NA non-coding downstream 14493 14655036 ~ 14655281 (+)
G216530 papolg non-coding downstream 54796 14695339 ~ 14695774 (+)
G216532 papolg non-coding downstream 56385 14696928 ~ 14701738 (+)
G216541 NA non-coding downstream 104174 14744717 ~ 14745319 (+)
gsto1 gsto1 other upstream 292533 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 889560 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 1155495 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 1323704 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 1324666 13315112 ~ 13315200 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 81857 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 2363998 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 2508799 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 3363710 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 3671350 18311893 ~ 18317228 (+)

Expression



Co-expression Network