LOC107197794 (LOC108434776,LOC106930291,LOC102224490,LOC103132489,LOC106944652,LOC105931504,LOC103464124,LOC107393648,LOC106518818)


Basic Information

Item Value
gene id LOC107197794
gene name LOC108434776,LOC106930291,LOC102224490,LOC103132489,LOC106944652,LOC105931504,LOC103464124,LOC107393648,LOC106518818
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 8245563 ~ 8252571 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684682.1
CTGTCCAAGCGGGCCACTGTACGATGCCTGACGTCACGGGGACAACAAGCTTTTCCTCTTTATAGCGCTGCATCCAAGTGTCTCTGCTCGTTTTTCTgcttaaattcagtgatttttcGCGTTTCGTCGGTGTTGTGTCAGTCTGCGATATCGAGTAGTATCGGGGCGGTGCTGAATAGACGCTGTTTTGTGAGGAAATGTAGAGATTTTAGGGTTATTTGCTAACTGGTTAGCAGGCTAGCTACCCCAGGGAGCTGAGCcgagctaggttagctaacagcagcagcagcagcggtaCTGCTGAGCCCATAGggctgtgtgagcagtgtgattatAACATAACCAGACTACAGCGGTTCTAAATAACCCCCAGCCGTGTTAAACTCCCGCTCTGAGGATGAACGCGCGCTTCACGAGCTCACGTGTGGACCAGGAGCATCTCTGCCTCAGAGCTGCCTGAGCACAGACTGCAGCAGCATGGCGGACACCCTCCTCCTCACCTTCCAGACCCAGCTCTCCGGGGTCATGGAGACCATCCTGAGGTCAGCTGTGTGTGAGATCACCAGGCTGGTGGAGGGCAGTTTCGTAGAGGAGCTTGGTCGCGGGAAACGTGAAGCGGATGTTCTGAGGAGAAGACTGCAAATCCTGGAAAGTAAactcagtgagagagagaggattaaAAGGGTTAAGTGTGTGGACTGTGGCAAATCTGGATTCTCCAAGAAGGAAGTAGATGGGAGAAGTTCTAGGCAACAAACTGGTGTGGAGTTGGTTGGTGTTAAGAAGCATGACATCTCCACTGATGGTGGCAGAAGCAGTGGGAAGGGAACTCTGACTTCAGGCCAAGAGGCATCGTCAACAATCCCAGACACTGAACTCAAGATTGTTGAAGTCGATGAAGCTAAAGTGGGAGGGACCATGAAAGAGGAGGTTGCAGAATCTCCAGACCTGCAGATCTACCCAACAGCACACAGTCACACTGCAGATCACAGAGAGCCACAGAGCCATAAGGTTGGCGAGACCTCAGGCCTCCATGCATTGCACTCCGACCACAAGATCCCTCAGCGGGACAAGCCAAGTCCCTCTGCCAACAAGTCGGGCAGTCCTGGTGTTCAGGATTCTGtgaaaaatagatcacttttaAAAAGGTCAGACTCTAAAACAGAGCATGCTGTGCAATCACCTCTCCCACAGCCCGGGCCTGCAGCTGTGCCATCTTCTGAGTATCCCTCTGTGAAACAGCTGGCAAAGAGTCCAGACTCTGTGCCAGTTAAACAGGAGGTTGTGGTGGTGCTTCCACCAGAATGGGAGGAGGTTGATAGAGTGAGGACAGGGACTGTTGCGGCCCCCAGCAGAGCAAATCCAGCACGGGATGAACTCCCTCGAGTAGATCCTCCTCCACCGAGACTTCCGGTGGAAGGAAATGTGGTGTTTCCTGggcttggtggtggtggtggtgcaggCAAGGTCAGCAGCCCTGCCTCTCAGGTCTTGCAGCAACTTAGGActtcagggaaaaaaaacaccaaactgGTAGAACATGGCAGCGTGTTGGCCTCCAACTCTGGCACTGTGAATGTAGCCAGGGGACTGCCAGTCCACAAGAGCCCAGCTTCTCTCCCTAAACCCCCTCAGGCACTTCAGCACATACAGAGAGCCTACACAGAGGAGAGGAGCATCAGCACTTTGCAGTCTGGACGGAATCTCATGCAGGCACTCAGCGTTAGGACTGGTGGTCATATTGGGCACCATGTGGTCAGGACTCCACACAACTGCAGCCAGTGCGGCAAAGGCTTCTCCCACTTGTGCCACCTGAGAGCTCACCAGCAGATCCACACAGGAGAAAGACAGTTCTGCTGCAGTCTGTGCGGCCGCAGCTTCACCAAGCTCAGCAATCTGAAGGCACATCGCAGGGTCCATACTGGGGAGAGACCCTACATCTGCATGGCCTGTGGCAAAAGGTTTACGCAGAAGTGCAACCTAAAAAGACACCAGAGAATTCACTCTGCCAACCTGTGACAAGACTTTAGATTTTAATAACTGTAATGATGAGTTTTAAGGAGTTGTGATCGGGCTCTGTGGAGTAGAGAGTACAGAGGTGTTCTGTGTTTATGGTGTTTGTTAACTGTTGTATTTGTGTACACTTGTTGTTTTGTATATGAGTGTATGGCTATTTAAGCAATACTGTGCTTACGGACTTTGCATAGGTCTAGTTTTTCATAGTTGAATGCCATCAAATGGCATCAGAATAGATTATGAATAAAGAACATTTTGTACTA
>XM_022684683.1
CTGTCCAAGCGGGCCACTGTACGATGCCTGACGTCACGGGGACAACAAGCTTTTCCTCTTTATAGCGCTGCATCCAAGTGTCTCTGCTCGTTTTTCTgcttaaattcagtgatttttcGCGTTTCGTCGGTGTTGTGTCAGTCTGCGATATCGAGTAGTATCGGGGCGGTGCTGAATAGACGCTGTTTTGTGAGGAAATGTAGAGATTTTAGGGTTATTTGCTAACTGGTTAGCAGGCTAGCTACCCCAGGGAGCTGAGCcgagctaggttagctaacagcagcagcagcagcggtaCTGCTGAGCCCATAGggctgtgtgagcagtgtgattatAACATAACCAGACTACAGCGGTTCTAAATAACCCCCAGCCGTGTTAAACTCCCGCTCTGAGGATGAACGCGCGCTTCACGAGCTCACGTGTGGACCAGGAGCATCTCTGCCTCAGAGCTGCCTGAGCACAGACTGCAGCATGGCGGACACCCTCCTCCTCACCTTCCAGACCCAGCTCTCCGGGGTCATGGAGACCATCCTGAGGTCAGCTGTGTGTGAGATCACCAGGCTGGTGGAGGGCAGTTTCGTAGAGGAGCTTGGTCGCGGGAAACGTGAAGCGGATGTTCTGAGGAGAAGACTGCAAATCCTGGAAAGTAAactcagtgagagagagaggattaaAAGGGTTAAGTGTGTGGACTGTGGCAAATCTGGATTCTCCAAGAAGGAAGTAGATGGGAGAAGTTCTAGGCAACAAACTGGTGTGGAGTTGGTTGGTGTTAAGAAGCATGACATCTCCACTGATGGTGGCAGAAGCAGTGGGAAGGGAACTCTGACTTCAGGCCAAGAGGCATCGTCAACAATCCCAGACACTGAACTCAAGATTGTTGAAGTCGATGAAGCTAAAGTGGGAGGGACCATGAAAGAGGAGGTTGCAGAATCTCCAGACCTGCAGATCTACCCAACAGCACACAGTCACACTGCAGATCACAGAGAGCCACAGAGCCATAAGGTTGGCGAGACCTCAGGCCTCCATGCATTGCACTCCGACCACAAGATCCCTCAGCGGGACAAGCCAAGTCCCTCTGCCAACAAGTCGGGCAGTCCTGGTGTTCAGGATTCTGtgaaaaatagatcacttttaAAAAGGTCAGACTCTAAAACAGAGCATGCTGTGCAATCACCTCTCCCACAGCCCGGGCCTGCAGCTGTGCCATCTTCTGAGTATCCCTCTGTGAAACAGCTGGCAAAGAGTCCAGACTCTGTGCCAGTTAAACAGGAGGTTGTGGTGGTGCTTCCACCAGAATGGGAGGAGGTTGATAGAGTGAGGACAGGGACTGTTGCGGCCCCCAGCAGAGCAAATCCAGCACGGGATGAACTCCCTCGAGTAGATCCTCCTCCACCGAGACTTCCGGTGGAAGGAAATGTGGTGTTTCCTGggcttggtggtggtggtggtgcaggCAAGGTCAGCAGCCCTGCCTCTCAGGTCTTGCAGCAACTTAGGActtcagggaaaaaaaacaccaaactgGTAGAACATGGCAGCGTGTTGGCCTCCAACTCTGGCACTGTGAATGTAGCCAGGGGACTGCCAGTCCACAAGAGCCCAGCTTCTCTCCCTAAACCCCCTCAGGCACTTCAGCACATACAGAGAGCCTACACAGAGGAGAGGAGCATCAGCACTTTGCAGTCTGGACGGAATCTCATGCAGGCACTCAGCGTTAGGACTGGTGGTCATATTGGGCACCATGTGGTCAGGACTCCACACAACTGCAGCCAGTGCGGCAAAGGCTTCTCCCACTTGTGCCACCTGAGAGCTCACCAGCAGATCCACACAGGAGAAAGACAGTTCTGCTGCAGTCTGTGCGGCCGCAGCTTCACCAAGCTCAGCAATCTGAAGGCACATCGCAGGGTCCATACTGGGGAGAGACCCTACATCTGCATGGCCTGTGGCAAAAGGTTTACGCAGAAGTGCAACCTAAAAAGACACCAGAGAATTCACTCTGCCAACCTGTGACAAGACTTTAGATTTTAATAACTGTAATGATGAGTTTTAAGGAGTTGTGATCGGGCTCTGTGGAGTAGAGAGTACAGAGGTGTTCTGTGTTTATGGTGTTTGTTAACTGTTGTATTTGTGTACACTTGTTGTTTTGTATATGAGTGTATGGCTATTTAAGCAATACTGTGCTTACGGACTTTGCATAGGTCTAGTTTTTCATAGTTGAATGCCATCAAATGGCATCAGAATAGATTATGAATAAAGAACATTTTGTACTA

Function

NR:

description
PREDICTED: zinc finger protein 500-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684682.1 True 2279 mRNA 0.51 4 8245563 8252571
XM_022684683.1 False 2276 mRNA 0.51 4 8245563 8252571

Neighbor

gene id symbol gene type direction distance location
LOC103029746 LOC103029746 coding upstream 1861 8238862 ~ 8243702 (+)
LOC103035882 NA coding upstream 18339 8209706 ~ 8227224 (+)
LOC103029427 LOC108434779 coding upstream 39456 8183415 ~ 8206107 (+)
slc43a3 slc43a3 coding upstream 118275 8115079 ~ 8127288 (+)
LOC103028482 LOC108434761,LOC105891496,LOC106611657,LOC101069382,LOC108243062,LOC106594846,LOC106604652 coding upstream 216392 8020649 ~ 8029171 (+)
LOC103036505 LOC107556808,LOC107556784 coding downstream 2013 8254584 ~ 8266613 (+)
galnt2 galnt2,LOC107725470,LOC107676591,LOC107666462,LOC107743534 coding downstream 53671 8306242 ~ 8453818 (+)
cog2 cog2,LOC107601846,LOC107725477,LOC107552949,LOC107666500,LOC107743537 coding downstream 261787 8514358 ~ 8530448 (+)
phactr2 phactr2 coding downstream 288394 8540965 ~ 8649769 (+)
LOC103040587 rgs17,LOC103040587,LOC108262465,LOC108434957,LOC107725462,LOC107552952 coding downstream 578674 8831245 ~ 8861433 (+)
LOC111195960 NA non-coding upstream 548 8237642 ~ 8245015 (+)
G214704 ctnnd1 non-coding upstream 160286 8074834 ~ 8085277 (+)
LOC111195956 NA non-coding upstream 316398 7927113 ~ 7929165 (+)
G214684 NA non-coding upstream 319059 7899502 ~ 7926504 (+)
G214686 NA non-coding upstream 337796 7905695 ~ 7907767 (+)
G214853 NA non-coding downstream 202173 8454744 ~ 8456163 (+)
G214868 NA non-coding downstream 363522 8616093 ~ 8658455 (+)
G214875 NA non-coding downstream 445357 8697928 ~ 8699697 (+)
G214881 NA non-coding downstream 466252 8718823 ~ 8722998 (+)
G214942 NA non-coding downstream 585983 8838554 ~ 8841483 (+)
G214773 NA other upstream 134238 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 368445 7856162 ~ 7877118 (+)
pold4 NA other upstream 432527 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 1836495 6399076 ~ 6409068 (+)
G214175 NA other upstream 1961195 6283781 ~ 6284368 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 705728 8958299 ~ 9030598 (+)
sprn sprn other downstream 2322924 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 2694508 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 2873129 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 3357747 11610318 ~ 11613123 (+)

Expression


Co-expression Network