fbxw4 (fbxw4,LOC107716323,LOC107707737,LOC107694796,LOC107673945,LOC107588663)


Basic Information

Item Value
gene id fbxw4
gene name fbxw4,LOC107716323,LOC107707737,LOC107694796,LOC107673945,LOC107588663
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 16931098 ~ 16967406 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684715.1
agtcgaagtgaatttatttttactttgctTACAACACAGACCACGTGACCCAATTCAGACTGGAATGGCTcccaccactgactgattttacACGCTGTGAAAAAGATGGGATTCTGTAAAGCTTTTCCTAAACCCAACAAATCAGTTCGCTGTAAAGACGTTAAAACACGTCGGATTAAAGTCACTGTGAGGAGTAAGAGGAGCGAGGCGCTGGATTTGAGACGGAGCCACCATGTCTCTGTTTCAGCTGCCAGAAGACGTTCTGTACCTCGTCCTGTCCTTCTTGGACTGCAGGTCTCTGTGTCGCCTCGCTCAGGTGTGCAGGAGGAGCCAGCAGTTCACCTACCGCGATGCGGTCTGGAGGAGGATAGCGAAAGACTTCATCAACACAGGAATGACCCGACTAGGACTGGACCTGTATCCTGGCATTCCATTAAAAGACAGAGTGAAGGTATCCCAGAATTGGAGTCGTGGTGTTTGTCGAAAAGATGTCCTTCTGAAATGGAAGATTAACTTGTTGCCGTGGATACAGCTGGATGATGATGTGCTGTATCTGTCTCAGGCAGCAGACATTGGAGCGTACCATCTCAGGGGTGCTGGAGGGGGGAGGTTTCAGCATAATAGGTTGGGTGTGTTTTCGGGACACGAAGAGGATGTGTGTAGATTTACTCTGACAGACGCACATCTTGTCAGTGCTGGAGgGGATGGGAAGATAATTGTTCATGACAGAAAAAGTGCTGAATCTGTGGCGTTTTATGCCCATGAGCAGGAAGTAAACTGCATTGACTGCAAAGGAGACTTGATCATCAGTGGCTCACGAGACAGGACTGCTAAGCTGTGGGCCTTAACTCCAAAGCCATTCGGCAGGCGTCTTCATACCATCCCTACCGATGACCGAGTGTGGTCTGTGGCCATTAGTCCCTCTTTATGCACTTTTGTGACTGGAACTGCGTGCTGTGAAGACTTTGATCCTCTTCGAATATGGGATACAGAGAGGTGTCACCTGGTGTCTTGTCTCGGCTCCGGGTTCCGCAGAGGTGCAGGTGTGTTGGATATTGTGTATGAGTCGCCCTTCCAGCTCCTCACCTGTGGATATGACACCTTTATCCGCTACTGGGATCTGCGTGTCTGCTCTAGCAAGTGCGTGATGGAGTGGGAGGAGCCCCATGACAGTGCACTTTACTGTATCAAGACTGATAAGAATCACATGATTGCCAGTGGCTCCTCCTATTATGGAGTGGTGCGCCTGTGGGACAAAAGGCAAACTCGCTGTTTGCAGATGTTCCAGCTCACCTCCACCACCAGCAGCCCGGTGTATAGCTTGTGCTTCAACACCACACACCTGTATGCTGCCCTGTCCTCAGCCCTGTGTTCACTGGACTTTAGAACTTCGGGGTTCAGGCCCAGAAGATAGAGCAGCACAACTTCTACACAAAGACACAGGTCCTCTCAAAGTGCACCTTGGGTTTCAAGCCCACATTAAACAAATCCAACATATCCTTTTAGCTCTAACAGCAGTTCTTTTGGCCTTTGACCTTCAGAGATTTCAACTAGACACTTCTGAAACACCATCAGAAATATCTGTGTCTCTCATGGCCTTGCATTGGCAGGGCAGATAGTGGCAGATAGTTGTCATTTCTCCAGCTATCTGTGTCACTGGCTACTGAGAGGGAGCGGTGGGAGCAGGGTTCACGACCTTCTGTGGCCTGAGTCTTAACGGACTTAACACATTGCCAGTGACCTGTGGGACTTCTAAAACAAACACTGCTCTGAGCTGCCAGAATGTCCTGTGGGGATTTATGCtgaaacatatacagtataataacatgctatttttttctattgtgttggaaatgtatatttttcaaCAGTGGGTCAGTTAGATGAGGTTTGGCCTGGCTTCGTGGTTCCTGAGTCCTGAGTTTTTCACAGTTCTTTATGACATTGTGAAGCagcatttttttgttgcagCTTTTTTTCTGGATGGATGCCACCTGGGATTTGATTGCATCATTTGACAAATAAAGATCTTAGACTATATACATAGTAAAAACCCAGGGTTTCTAACTTGTAGCTCTTTAACCACTGATGTCTCATGACAAGGATGTTGTTGAAAatgatcaataaaaaatattgatttaaaaaaaaaaaaa
>XM_022684716.1
agtcgaagtgaatttatttttactttgctTACAACACAGACCACGTGACCCAATTCAGACTGGAATGGCTcccaccactgactgattttacACGCTGTGAAAAAGATGGGATTCTGTAAAGCTTTTCCTAAACCCAACAAATCAGTTCGCTGTAAAGACGTTAAAACACGTCGGATTAAAGTCACTGTGAGGAGTAAGAGGAGCGAGGCGCTGGATTTGAGACGGAGCCACCATGTCTCTGTTTCAGCTGCCAGAAGACGTTCTGTACCTCGTCCTGTCCTTCTTGGACTGCAGGTCTCTGTGTCGCCTCGCTCAGGTGTGCAGGAGGAGCCAGCAGTTCACCTACCGCGATGCGGTCTGGAGGAGGATAGCGAAAGACTTCATCAACACAGGAATGACCCGACTAGGACTGGACCTGTATCCTGGCATTCCATTAAAAGACAGAGTGAAGGTATCCCAGAATTGGAGTCGTGGTGTTTGTCGAAAAGATGTCCTTCTGAAATGGAAGATTAAGGATGGGAAGATAATTGTTCATGACAGAAAAAGTGCTGAATCTGTGGCGTTTTATGCCCATGAGCAGGAAGTAAACTGCATTGACTGCAAAGGAGACTTGATCATCAGTGGCTCACGAGACAGGACTGCTAAGCTGTGGGCCTTAACTCCAAAGCCATTCGGCAGGCGTCTTCATACCATCCCTACCGATGACCGAGTGTGGTCTGTGGCCATTAGTCCCTCTTTATGCACTTTTGTGACTGGAACTGCGTGCTGTGAAGACTTTGATCCTCTTCGAATATGGGATACAGAGAGGTGTCACCTGGTGTCTTGTCTCGGCTCCGGGTTCCGCAGAGGTGCAGGTGTGTTGGATATTGTGTATGAGTCGCCCTTCCAGCTCCTCACCTGTGGATATGACACCTTTATCCGCTACTGGGATCTGCGTGTCTGCTCTAGCAAGTGCGTGATGGAGTGGGAGGAGCCCCATGACAGTGCACTTTACTGTATCAAGACTGATAAGAATCACATGATTGCCAGTGGCTCCTCCTATTATGGAGTGGTGCGCCTGTGGGACAAAAGGCAAACTCGCTGTTTGCAGATGTTCCAGCTCACCTCCACCACCAGCAGCCCGGTGTATAGCTTGTGCTTCAACACCACACACCTGTATGCTGCCCTGTCCTCAGCCCTGTGTTCACTGGACTTTAGAACTTCGGGGTTCAGGCCCAGAAGATAGAGCAGCACAACTTCTACACAAAGACACAGGTCCTCTCAAAGTGCACCTTGGGTTTCAAGCCCACATTAAACAAATCCAACATATCCTTTTAGCTCTAACAGCAGTTCTTTTGGCCTTTGACCTTCAGAGATTTCAACTAGACACTTCTGAAACACCATCAGAAATATCTGTGTCTCTCATGGCCTTGCATTGGCAGGGCAGATAGTGGCAGATAGTTGTCATTTCTCCAGCTATCTGTGTCACTGGCTACTGAGAGGGAGCGGTGGGAGCAGGGTTCACGACCTTCTGTGGCCTGAGTCTTAACGGACTTAACACATTGCCAGTGACCTGTGGGACTTCTAAAACAAACACTGCTCTGAGCTGCCAGAATGTCCTGTGGGGATTTATGCtgaaacatatacagtataataacatgctatttttttctattgtgttggaaatgtatatttttcaaCAGTGGGTCAGTTAGATGAGGTTTGGCCTGGCTTCGTGGTTCCTGAGTCCTGAGTTTTTCACAGTTCTTTATGACATTGTGAAGCagcatttttttgttgcagCTTTTTTTCTGGATGGATGCCACCTGGGATTTGATTGCATCATTTGACAAATAAAGATCTTAGACTATATACATAGTAAAAACCCAGGGTTTCTAACTTGTAGCTCTTTAACCACTGATGTCTCATGACAAGGATGTTGTTGAAAatgatcaataaaaaatattgatttaaaaaaaaaaaaa

Function

symbol description
fbxw4 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in split hand-foot malformation 3. Orthologous to human FBXW4 (F-box and WD repeat domain containing 4).

NR:

description
F-box/WD repeat-containing protein 4

GO: NA

KEGG:

id description
K10262 FBXW4, SHFM3; F-box and WD-40 domain protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684715.1 True 2153 mRNA 0.47 9 16931098 16967406
XM_022684716.1 False 1964 mRNA 0.46 8 16931098 16967406

Neighbor

gene id symbol gene type direction distance location
fgf8_1 fgf8,fgf8a,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding upstream 8158 16916701 ~ 16922940 (+)
LOC103035008 slc2a15a,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC108262874,LOC107585370,LOC107708408,LOC107696166 coding upstream 51338 16852704 ~ 16879760 (+)
b3gat2 b3gat2 coding upstream 379452 16524117 ~ 16551646 (+)
LOC103032358 asrgl1,LOC103032358,LOC105911569,LOC107695955,LOC107585330,LOC108442615,LOC107673965 coding upstream 478394 16439597 ~ 16452704 (+)
mb21d1 NA coding upstream 814608 16110265 ~ 16116490 (+)
wbp1l wbp1l coding downstream 14647 16982053 ~ 16994408 (+)
cnnm2 cnnm2,cnnm2a,LOC107673921,LOC107716327,LOC107585325,LOC107588659 coding downstream 43149 17010555 ~ 17029001 (+)
LOC103037825 ina coding downstream 84574 17051980 ~ 17056045 (+)
polr1c polr1c coding downstream 96490 17063896 ~ 17067641 (+)
ldb1 ldb1,ldb1a,LOC108442788,LOC108444470,LOC107585322,LOC107673939,LOC107707596 coding downstream 109633 17077039 ~ 17107707 (+)
LOC111196035 NA non-coding upstream 32704 16883025 ~ 16898394 (+)
G216941 smap1,LOC107588664,LOC107694205,LOC107585328 non-coding upstream 211617 16560852 ~ 16719481 (+)
G216953 NA non-coding upstream 443560 16485902 ~ 16487538 (+)
LOC103031925 NA non-coding upstream 461229 16455337 ~ 16469869 (+)
G216910 NA non-coding upstream 607797 16255488 ~ 16323301 (+)
G217109 NA non-coding downstream 42168 17009574 ~ 17009798 (+)
G217122 pcgf6 non-coding downstream 90924 17058330 ~ 17060581 (+)
G217140 NA non-coding downstream 296724 17264130 ~ 17264431 (+)
G217222 NA non-coding downstream 427633 17395039 ~ 17395249 (+)
G217313 NA non-coding downstream 809360 17776766 ~ 17777086 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 2150785 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 2583765 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 3180792 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 3446727 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 3614936 13316075 ~ 13316162 (+)
borcs7 borcs7 other downstream 37135 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 181936 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 1036847 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 1344487 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 1775800 18743206 ~ 18744327 (+)

Expression


Co-expression Network