ldb1 (ldb1,ldb1a,LOC108442788,LOC108444470,LOC107585322,LOC107673939,LOC107707596)


Basic Information

Item Value
gene id ldb1
gene name ldb1,ldb1a,LOC108442788,LOC108444470,LOC107585322,LOC107673939,LOC107707596
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17077039 ~ 17107707 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684719.1
atgccactcttggtgcaaaaattcaagcagttcaagcaGTATGGGTGAGAAGATGTCTGTTGGAGGTTGCGCTTGCCCAGGCTGTTCGTCCAAGTCGTTCAAGCTGTACTCCCCAAAGGAGCCTCCCAACGGTAGTGCCTTTCCCCCTTTTCATCCTGGCACAATGCTGGACAGAGATGTGGGACCAACACCAATGTATCCCCCCTCGTACATGGAACCTGGGATAGGAAGGCACACGCCGTATGGAAATCAAACAGACTACAGGATATTTGAACTCAATAAACGGCTACAGAACTGGACAGAGcagGACTGTGACAATCTGTGGTGGGATGCTTTCACAACAGAGTTTTTTGAAGATGATGCAATGTTGACTATCACATTTTGTTTGGAAGATGGACCTAAAAGATATACAATTGGCCGGACGTTAATTCCTCGCTACTTCAGAAGCATCTTTGAGGGAGGAGCCACTGAACTCTTTTATGTACTGAAGCATCCCAAGGAGTCCTTCCACAGCAACTTTGTATCTCTCGACTGTGATCAGTGCACCATGGTCACGCAGAACGGCAAGCCCATGTTTACACAGGTTTGTGTAGAAGGAAGGTTGTATTTGGAGTTCATGTTTGACGATATGATGCGCATAAAGACGTGGCACTTCAGCATCCGACAACACCGAGAAGTCGTACCACGCAGCATACTGGCCATGCACGCCCAGGACCCTCAGATGCTTGACCAGCTTTCAAAAAACATTACAAGATGTGGATTATCTAATTCAACTTTAAACTACCTCCGACTTTGTGTAATCCTGGAGCCCATGCAGGAGCTAATGTCCAGACACAAGACGTATAGCCTCAGTCCCCGAGATTGCTTAAAGACCTGTTTATTTCAGAAATGGCAAAGAATGGTTGCCCCACCAGCTGAGCCAGCAAGACAAGCACCAAACAAGCGGCGGAAAAGAAAGATGTCGGGTGGCAGCACAGTGAGTGCAGGTGGTGGcaccaacaacaacagcaacagcaaGAAGAAAAGTCCAGCCAGCAGCTTTGCGCTCTCCAGCCAGGTACCTGATGTGATGGTGGTGGGCGAGCCCACTCTGATGGGAGGGGAGTTCGGGGACGAGGATGAGCGACTGATCACACGGCTCGAGAACACACAGTTTGATGCAGCCAATGGCATCGATGACGAGGACAGTTTCACCAACTCTCCAGCCCTGGGCAACAACAGCCCCTGGAACAACAAAGCTCCCTCCAGCCAGGAGAGCAAGAGCGACAACCCCACCTCACAGTCAGCTCAGTAGACCACAGCCCTCACTGTGGAGGGTTAGGGAAAGGCATGCAGTAAATAGAGGACATTTTTAAATTTCCGTCGTTTGATTGAAATGGCACTCGCGTTTTAGTTCTTAGAACCGGCCTCCCTACCATAGTGCTTTGCTCTGAAGAATCCCAACTGGCCAGACTCTGTTCTTCTTTAGCTTGTGAAATTGTGCTTTTTGCAAATTACTGTAGAATTAATCATCTGCATTTGATATTtgaattattcttttatttctctgaaATGATCTCACTGTGCATTTgtgcctgagagagagagagaatctagTTTTAGCCCTAGAAAAGAATCAGTGTCTGGTCTGTTTGAGTTCTCTGAGCTTGAGAACAGCAGAGTTAGTGAAGGCAGCCATGTCTGTGGGTTCTTGTTCCAACCTCGGGTCTCTGGGTGCTGTGCTTGACAATGCATGGCGGTTTCTGTTGTGCTCACTTCACAGAAAAGGGtcttttgaaaattatttttgaatattattttgttttcttatttaagCATCTGATGATAAACATTATGCGCACCTCAGATTCAAAACCAGCTCCTTCTTATTTGATTTCACTTTATTtcaaacaagaaagaaaaacctgaattatttgttttgtagGACCTGGTTGGAACAAAAACCTGTACAGTTCCGGAGCTTGAGGACCGGAGTTGAGAACCACTAcgtcttttaaaaataaataaataagtgtaaaTCTTGATGGTACTGGAGTACTGGTCATGCTCAGTATGGTCATATGCAGAAGTTGCCTACCATGAACCCAGGCTCAAAAGAggagttttattgatttttttttgttttgttttttttacatttgttttttttgtttcatttttatatatcaaTTTGTAAAGGTAAAATTATAAGCAAGTTAAAACACCCTGACTATCCTTTGCACTGTTGTCACTGTATTCTCAATCTATTTTTCTTACAAAATTCTAgtacattttcttctttttatccttccctgtttaaaaaaaaaaaatgttgaatttgACTAAAGCTGTAACTGGAGAATGGtagagatttatatatatatatatatatatatatataatgctttttattatttttattattattattatgctttacACATTTGAGATAGGCAAGTTGACTTCCTTTTAAATGTGTGCTAAAGTTAGTTTTATCACAGCATGTGTGTCTGGAAACTGCATGTTTCAGACATCTATTcccactgtactgtactctataTGTCAGTGCCCATATTCTTTCTAGGAACTATTAAGTTGATGTCTGTGACAGATTTTTAGTTTTGTCAAGGAAGCTCAAAACCTTCAGAAAATGGAAATAATGCTGACCAAATGTTCTCAAATTGCAAAGCATAATGCCTCATTCCCATTAGTAAATACTCACcatgtaattattttagtttcccaatatttttggattttttttttaaatgctacaGACCAAGAAGCTATGAGCAAGATACTTTAATCTCAGCCCTTGTGTATTTGTTTCTATGAAGAAttcttttcatattttgtttGTGTAATTGTGCTGTATATTTAAGACTGTAGCTATGTTCTGTATAAGTGTAATTGTATTTACTCTTCTTTAGAGCATCCCTGCGGGCGTGCGGTTTAATGTAAAAACGAAAACCTAATCATGCAttgtagaaaatgtttttagatgCATTAACCATAGTCACGTCAGCTTGTAGATCATAGTTTTATTTcaatgtataatgtatttattatttttttttatcttgccaCTTCATAATGTCTGGATACAATACATAGTCTTATGTAAAAAACTTCAATCTTTGGACAAATTCTCAATAGAAAATTTCTATGCTGCCTTTGTCCTTTTTTCCTGTATAacataattacactttaattTCATGTGTGACATGTAAGACTATGAAATCATCAATGTTGTTGGTTTGACATTGTTGCACTGAATTTAAAGTCAATCCTTTTCGGTTTAAAACAAATCCCTTGACATAAGCCATACTAGGTCTTAACACCAGGTGGCATTCTGCATTGTGGCCTCATTTGTAATGggggaaaggaaaaaataattcACTTCTTATCAATTCAGCCAAGTATTCTGCCCAATTGTGTGGctattttatatgaaaaataaatacattgttcAGCTGACTCAGACAGTCCAGTGTTTGTTTGGGATTATTCACCAAATCAAAGGGGAAGCTCCTTTGTGTTCTTGTAGAGCCCCTTTGATAGTGGCTGTTtgataagtatatttttttctagtgtCTGCAATGATGATTCATGTAtggtattaataaaaaaatgaattttcacttaaa
>XM_022684720.1
tatgccactcttggtgcaaaaattcaagcagttcaagcaGTATGGGTGAGAAGATGTCTGTTGGAGGTTGCGCTTGCCCAGGCTGTTCGTCCAAGTCGTTCAAGCTGTACTCCCCAAAGGAGCCTCCCAACGGTAGTGCCTTTCCCCCTTTTCATCCTGGCACAATGCTGGACAGAGATGTGGGACCAACACCAATGTATCCCCCCTCGTACATGGAACCTGGGATAGGAAGGCACACGCCGTATGGAAATCAAACAGACTACAGGATATTTGAACTCAATAAACGGCTACAGAACTGGACAGAGcagGACTGTGACAATCTGTGGTGGGATGCTTTCACAACAGAGTTTTTTGAAGATGATGCAATGTTGACTATCACATTTTGTTTGGAAGATGGACCTAAAAGATATACAATTGGCCGGACGTTAATTCCTCGCTACTTCAGAAGCATCTTTGAGGGAGGAGCCACTGAACTCTTTTATGTACTGAAGCATCCCAAGGAGTCCTTCCACAGCAACTTTGTATCTCTCGACTGTGATCAGTGCACCATGGTCACGCAGAACGGCAAGCCCATGTTTACACAGGTTTGTGTAGAAGGAAGGTTGTATTTGGAGTTCATGTTTGACGATATGATGCGCATAAAGACGTGGCACTTCAGCATCCGACAACACCGAGAAGTCGTACCACGCAGCATACTGGCCATGCACGCCCAGGACCCTCAGATGCTTGACCAGCTTTCAAAAAACATTACAAGATGTGGATTATCTAATTCAACTTTAAACTACCTCCGACTTTGTGTAATCCTGGAGCCCATGCAGGAGCTAATGTCCAGACACAAGACGTATAGCCTCAGTCCCCGAGATTGCTTAAAGACCTGTTTATTTCAGAAATGGCAAAGAATGGTTGCCCCACCAGCTGAGCCAGCAAGACAAGCACCAAACAAGCGGCGGAAAAGAAAGATGTCGGGTGGCAGCACAGTGAGTGCAGGTGGTGGcaccaacaacaacagcaacagcaaGAAGAAAAGTCCAGCCAGCAGCTTTGCGCTCTCCAGCCAGGATGTGATGGTGGTGGGCGAGCCCACTCTGATGGGAGGGGAGTTCGGGGACGAGGATGAGCGACTGATCACACGGCTCGAGAACACACAGTTTGATGCAGCCAATGGCATCGATGACGAGGACAGTTTCACCAACTCTCCAGCCCTGGGCAACAACAGCCCCTGGAACAACAAAGCTCCCTCCAGCCAGGAGAGCAAGAGCGACAACCCCACCTCACAGTCAGCTCAGTAGACCACAGCCCTCACTGTGGAGGGTTAGGGAAAGGCATGCAGTAAATAGAGGACATTTTTAAATTTCCGTCGTTTGATTGAAATGGCACTCGCGTTTTAGTTCTTAGAACCGGCCTCCCTACCATAGTGCTTTGCTCTGAAGAATCCCAACTGGCCAGACTCTGTTCTTCTTTAGCTTGTGAAATTGTGCTTTTTGCAAATTACTGTAGAATTAATCATCTGCATTTGATATTtgaattattcttttatttctctgaaATGATCTCACTGTGCATTTgtgcctgagagagagagagaatctagTTTTAGCCCTAGAAAAGAATCAGTGTCTGGTCTGTTTGAGTTCTCTGAGCTTGAGAACAGCAGAGTTAGTGAAGGCAGCCATGTCTGTGGGTTCTTGTTCCAACCTCGGGTCTCTGGGTGCTGTGCTTGACAATGCATGGCGGTTTCTGTTGTGCTCACTTCACAGAAAAGGGtcttttgaaaattatttttgaatattattttgttttcttatttaagCATCTGATGATAAACATTATGCGCACCTCAGATTCAAAACCAGCTCCTTCTTATTTGATTTCACTTTATTtcaaacaagaaagaaaaacctgaattatttgttttgtagGACCTGGTTGGAACAAAAACCTGTACAGTTCCGGAGCTTGAGGACCGGAGTTGAGAACCACTAcgtcttttaaaaataaataaataagtgtaaaTCTTGATGGTACTGGAGTACTGGTCATGCTCAGTATGGTCATATGCAGAAGTTGCCTACCATGAACCCAGGCTCAAAAGAggagttttattgatttttttttgttttgttttttttacatttgttttttttgtttcatttttatatatcaaTTTGTAAAGGTAAAATTATAAGCAAGTTAAAACACCCTGACTATCCTTTGCACTGTTGTCACTGTATTCTCAATCTATTTTTCTTACAAAATTCTAgtacattttcttctttttatccttccctgtttaaaaaaaaaaaatgttgaatttgACTAAAGCTGTAACTGGAGAATGGtagagatttatatatatatatatatatatatatataatgctttttattatttttattattattattatgctttacACATTTGAGATAGGCAAGTTGACTTCCTTTTAAATGTGTGCTAAAGTTAGTTTTATCACAGCATGTGTGTCTGGAAACTGCATGTTTCAGACATCTATTcccactgtactgtactctataTGTCAGTGCCCATATTCTTTCTAGGAACTATTAAGTTGATGTCTGTGACAGATTTTTAGTTTTGTCAAGGAAGCTCAAAACCTTCAGAAAATGGAAATAATGCTGACCAAATGTTCTCAAATTGCAAAGCATAATGCCTCATTCCCATTAGTAAATACTCACcatgtaattattttagtttcccaatatttttggattttttttttaaatgctacaGACCAAGAAGCTATGAGCAAGATACTTTAATCTCAGCCCTTGTGTATTTGTTTCTATGAAGAAttcttttcatattttgtttGTGTAATTGTGCTGTATATTTAAGACTGTAGCTATGTTCTGTATAAGTGTAATTGTATTTACTCTTCTTTAGAGCATCCCTGCGGGCGTGCGGTTTAATGTAAAAACGAAAACCTAATCATGCAttgtagaaaatgtttttagatgCATTAACCATAGTCACGTCAGCTTGTAGATCATAGTTTTATTTcaatgtataatgtatttattatttttttttatcttgccaCTTCATAATGTCTGGATACAATACATAGTCTTATGTAAAAAACTTCAATCTTTGGACAAATTCTCAATAGAAAATTTCTATGCTGCCTTTGTCCTTTTTTCCTGTATAacataattacactttaattTCATGTGTGACATGTAAGACTATGAAATCATCAATGTTGTTGGTTTGACATTGTTGCACTGAATTTAAAGTCAATCCTTTTCGGTTTAAAACAAATCCCTTGACATAAGCCATACTAGGTCTTAACACCAGGTGGCATTCTGCATTGTGGCCTCATTTGTAATGggggaaaggaaaaaataattcACTTCTTATCAATTCAGCCAAGTATTCTGCCCAATTGTGTGGctattttatatgaaaaataaatacattgttcAGCTGACTCAGACAGTCCAGTGTTTGTTTGGGATTATTCACCAAATCAAAGGGGAAGCTCCTTTGTGTTCTTGTAGAGCCCCTTTGATAGTGGCTGTTtgataagtatatttttttctagtgtCTGCAATGATGATTCATGTAtggtattaataaaaaaatgaattttcacttaaa
>XM_022684721.1
tgccactcttggtgcaaaaattcaagcagttcaagcaGTATGGGTGAGAAGATGTCTGTTGGAGGTTGCGCTTGCCCAGGCTGTTCGTCCAAGTCGTTCAAGCTGTACTCCCCAAAGGAGCCTCCCAACGGTAGTGCCTTTCCCCCTTTTCATCCTGGCACAATGCTGGACAGAGATGTGGGACCAACACCAATGTATCCCCCCTCGTACATGGAACCTGGGATAGGAAGGCACACGCCGTATGGAAATCAAACAGACTACAGGATATTTGAACTCAATAAACGGCTACAGAACTGGACAGAGcagGACTGTGACAATCTGTGGTGGGATGCTTTCACAACAGAGTTTTTTGAAGATGATGCAATGTTGACTATCACATTTTGTTTGGAAGATGGACCTAAAAGATATACAATTGGCCGGACGTTAATTCCTCGCTACTTCAGAAGCATCTTTGAGGGAGGAGCCACTGAACTCTTTTATGTACTGAAGCATCCCAAGGAGTCCTTCCACAGCAACTTTGTATCTCTCGACTGTGATCAGTGCACCATGGTCACGCAGAACGGCAAGCCCATGTTTACACAGGTTTGTGTAGAAGGAAGGTTGTATTTGGAGTTCATGTTTGACGATATGATGCGCATAAAGACGTGGCACTTCAGCATCCGACAACACCGAGAAGTCGTACCACGCAGCATACTGGCCATGCACGCCCAGGACCCTCAGATGCTTGACCAGCTTTCAAAAAACATTACAAGATGTGGATTATCTAATTCAACTTTAAACTACCTCCGACTTTGTGTAATCCTGGAGCCCATGCAGGAGCTAATGTCCAGACACAAGACGTATAGCCTCAGTCCCCGAGATTGCTTAAAGACCTGTTTATTTCAGAAATGGCAAAGAATGGTTGCCCCACCAGCTGAGCCAGCAAGACAAGCACCAAACAAGCGGCGGAAAAGAAAGATGTCGGGTGGCAGCACAGTGAGTGCAGGTGGTGGcaccaacaacaacagcaacagcaaGAAGAAAAGTCCAGCCAGCAGCTTTGCGCTCTCCAGCCAGGTACCTGACCTGGTTGGAACAAAAACCTGTACAGTTCCGGAGCTTGAGGACCGGAGTTGAGAACCACTAcgtcttttaaaaataaataaataagtgtaaaTCTTGATGGTACTGGAGTACTGGTCATGCTCAGTATGGTCATATGCAGAAGTTGCCTACCATGAACCCAGGCTCAAAAGAggagttttattgatttttttttgttttgttttttttacatttgttttttttgtttcatttttatatatcaaTTTGTAAAGGTAAAATTATAAGCAAGTTAAAACACCCTGACTATCCTTTGCACTGTTGTCACTGTATTCTCAATCTATTTTTCTTACAAAATTCTAgtacattttcttctttttatccttccctgtttaaaaaaaaaaaatgttgaatttgACTAAAGCTGTAACTGGAGAATGGtagagatttatatatatatatatatatatatatataatgctttttattatttttattattattattatgctttacACATTTGAGATAGGCAAGTTGACTTCCTTTTAAATGTGTGCTAAAGTTAGTTTTATCACAGCATGTGTGTCTGGAAACTGCATGTTTCAGACATCTATTcccactgtactgtactctataTGTCAGTGCCCATATTCTTTCTAGGAACTATTAAGTTGATGTCTGTGACAGATTTTTAGTTTTGTCAAGGAAGCTCAAAACCTTCAGAAAATGGAAATAATGCTGACCAAATGTTCTCAAATTGCAAAGCATAATGCCTCATTCCCATTAGTAAATACTCACcatgtaattattttagtttcccaatatttttggattttttttttaaatgctacaGACCAAGAAGCTATGAGCAAGATACTTTAATCTCAGCCCTTGTGTATTTGTTTCTATGAAGAAttcttttcatattttgtttGTGTAATTGTGCTGTATATTTAAGACTGTAGCTATGTTCTGTATAAGTGTAATTGTATTTACTCTTCTTTAGAGCATCCCTGCGGGCGTGCGGTTTAATGTAAAAACGAAAACCTAATCATGCAttgtagaaaatgtttttagatgCATTAACCATAGTCACGTCAGCTTGTAGATCATAGTTTTATTTcaatgtataatgtatttattatttttttttatcttgccaCTTCATAATGTCTGGATACAATACATAGTCTTATGTAAAAAACTTCAATCTTTGGACAAATTCTCAATAGAAAATTTCTATGCTGCCTTTGTCCTTTTTTCCTGTATAacataattacactttaattTCATGTGTGACATGTAAGACTATGAAATCATCAATGTTGTTGGTTTGACATTGTTGCACTGAATTTAAAGTCAATCCTTTTCGGTTTAAAACAAATCCCTTGACATAAGCCATACTAGGTCTTAACACCAGGTGGCATTCTGCATTGTGGCCTCATTTGTAATGggggaaaggaaaaaataattcACTTCTTATCAATTCAGCCAAGTATTCTGCCCAATTGTGTGGctattttatatgaaaaataaatacattgttcAGCTGACTCAGACAGTCCAGTGTTTGTTTGGGATTATTCACCAAATCAAAGGGGAAGCTCCTTTGTGTTCTTGTAGAGCCCCTTTGATAGTGGCTGTTtgataagtatatttttttctagtgtCTGCAATGATGATTCATGTAtggtattaataaaaaaatgaattttcacttaaa
>XM_022684722.1
tgccactcttggtgcaaaaattcaagcagttcaagcaGTATGGGTGAGAAGATGTCTGTTGGAGGTTGCGCTTGCCCAGGCTGTTCGTCCAAGTCGTTCAAGCTGTACTCCCCAAAGGAGCCTCCCAACGGTAGTGCCTTTCCCCCTTTTCATCCTGGCACAATGCTGGACAGAGATGTGGGACCAACACCAATGTATCCCCCCTCGTACATGGAACCTGGGATAGGAAGGCACACGCCGTATGGAAATCAAACAGACTACAGGATATTTGAACTCAATAAACGGCTACAGAACTGGACAGAGcagGACTGTGACAATCTGTGGTGGGATGCTTTCACAACAGAGTTTTTTGAAGATGATGCAATGTTGACTATCACATTTTGTTTGGAAGATGGACCTAAAAGATATACAATTGGCCGGACGTTAATTCCTCGCTACTTCAGAAGCATCTTTGAGGGAGGAGCCACTGAACTCTTTTATGTACTGAAGCATCCCAAGGAGTCCTTCCACAGCAACTTTGTATCTCTCGACTGTGATCAGTGCACCATGGTCACGCAGAACGGCAAGCCCATGTTTACACAGGTTTGTGTAGAAGGAAGGTTGTATTTGGAGTTCATGTTTGACGATATGATGCGCATAAAGACGTGGCACTTCAGCATCCGACAACACCGAGAAGTCGTACCACGCAGCATACTGGCCATGCACGCCCAGGACCCTCAGATGCTTGACCAGCTTTCAAAAAACATTACAAGATGTGGATTATCTAATTCAACTTTAAACTACCTCCGACTTTGTGTAATCCTGGAGCCCATGCAGGAGCTAATGTCCAGACACAAGACGTATAGCCTCAGTCCCCGAGATTGCTTAAAGACCTGTTTATTTCAGAAATGGCAAAGAATGGTTGCCCCACCAGCTGAGCCAGCAAGACAAGCACCAAACAAGCGGCGGAAAAGAAAGATGTCGGGTGGCAGCACAGTGAGTGCAGGTGGTGGcaccaacaacaacagcaacagcaaGAAGAAAAGTCCAGCCAGCAGCTTTGCGCTCTCCAGCCAGGACCTGGTTGGAACAAAAACCTGTACAGTTCCGGAGCTTGAGGACCGGAGTTGAGAACCACTAcgtcttttaaaaataaataaataagtgtaaaTCTTGATGGTACTGGAGTACTGGTCATGCTCAGTATGGTCATATGCAGAAGTTGCCTACCATGAACCCAGGCTCAAAAGAggagttttattgatttttttttgttttgttttttttacatttgttttttttgtttcatttttatatatcaaTTTGTAAAGGTAAAATTATAAGCAAGTTAAAACACCCTGACTATCCTTTGCACTGTTGTCACTGTATTCTCAATCTATTTTTCTTACAAAATTCTAgtacattttcttctttttatccttccctgtttaaaaaaaaaaaatgttgaatttgACTAAAGCTGTAACTGGAGAATGGtagagatttatatatatatatatatatatatatataatgctttttattatttttattattattattatgctttacACATTTGAGATAGGCAAGTTGACTTCCTTTTAAATGTGTGCTAAAGTTAGTTTTATCACAGCATGTGTGTCTGGAAACTGCATGTTTCAGACATCTATTcccactgtactgtactctataTGTCAGTGCCCATATTCTTTCTAGGAACTATTAAGTTGATGTCTGTGACAGATTTTTAGTTTTGTCAAGGAAGCTCAAAACCTTCAGAAAATGGAAATAATGCTGACCAAATGTTCTCAAATTGCAAAGCATAATGCCTCATTCCCATTAGTAAATACTCACcatgtaattattttagtttcccaatatttttggattttttttttaaatgctacaGACCAAGAAGCTATGAGCAAGATACTTTAATCTCAGCCCTTGTGTATTTGTTTCTATGAAGAAttcttttcatattttgtttGTGTAATTGTGCTGTATATTTAAGACTGTAGCTATGTTCTGTATAAGTGTAATTGTATTTACTCTTCTTTAGAGCATCCCTGCGGGCGTGCGGTTTAATGTAAAAACGAAAACCTAATCATGCAttgtagaaaatgtttttagatgCATTAACCATAGTCACGTCAGCTTGTAGATCATAGTTTTATTTcaatgtataatgtatttattatttttttttatcttgccaCTTCATAATGTCTGGATACAATACATAGTCTTATGTAAAAAACTTCAATCTTTGGACAAATTCTCAATAGAAAATTTCTATGCTGCCTTTGTCCTTTTTTCCTGTATAacataattacactttaattTCATGTGTGACATGTAAGACTATGAAATCATCAATGTTGTTGGTTTGACATTGTTGCACTGAATTTAAAGTCAATCCTTTTCGGTTTAAAACAAATCCCTTGACATAAGCCATACTAGGTCTTAACACCAGGTGGCATTCTGCATTGTGGCCTCATTTGTAATGggggaaaggaaaaaataattcACTTCTTATCAATTCAGCCAAGTATTCTGCCCAATTGTGTGGctattttatatgaaaaataaatacattgttcAGCTGACTCAGACAGTCCAGTGTTTGTTTGGGATTATTCACCAAATCAAAGGGGAAGCTCCTTTGTGTTCTTGTAGAGCCCCTTTGATAGTGGCTGTTtgataagtatatttttttctagtgtCTGCAATGATGATTCATGTAtggtattaataaaaaaatgaattttcacttaaa

Function

symbol description
ldb1a Enables LIM domain binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; nervous system development; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including eye; gill; heart; pleuroperitoneal region; and post-vent region. Orthologous to human LDB1 (LIM domain binding 1).
ldb1 Enables LIM domain binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and enzyme binding activity. Involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Located in chromatin. Part of beta-catenin-TCF complex.

NR:

description
PREDICTED: LIM domain-binding protein 1 isoform X3

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003712 transcription coregulator activity molecular_function
GO:0030274 LIM domain binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K15617 LDB1; LIM domain-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684719.1 True 3626 mRNA 0.39 11 17077040 17107707
XM_022684720.1 False 3621 mRNA 0.39 11 17077039 17107707
XM_022684721.1 False 2764 mRNA 0.38 11 17077041 17107707
XM_022684722.1 False 2758 mRNA 0.38 11 17077041 17107707

Neighbor

gene id symbol gene type direction distance location
polr1c polr1c coding upstream 9398 17063896 ~ 17067641 (+)
LOC103037825 ina coding upstream 20994 17051980 ~ 17056045 (+)
cnnm2 cnnm2,cnnm2a,LOC107673921,LOC107716327,LOC107585325,LOC107588659 coding upstream 48038 17010555 ~ 17029001 (+)
wbp1l wbp1l coding upstream 82631 16982053 ~ 16994408 (+)
fbxw4 fbxw4,LOC107716323,LOC107707737,LOC107694796,LOC107673945,LOC107588663 coding upstream 109633 16931098 ~ 16967406 (+)
LOC103040130 NA coding downstream 1556 17109263 ~ 17130106 (+)
nsmce4a nsmce4a,LOC108262367,LOC107716332,LOC107688307,LOC107707575,LOC107585317 coding downstream 32964 17140671 ~ 17145888 (+)
LOC103040431 NA coding downstream 79434 17187141 ~ 17261572 (+)
unc5b unc5b,LOC107588651,LOC107707543,LOC107688303 coding downstream 372704 17480411 ~ 17575186 (+)
LOC103043107 LOC108442891,LOC108263542 coding downstream 471491 17579198 ~ 17632034 (+)
G217122 pcgf6 non-coding upstream 16458 17058330 ~ 17060581 (+)
G217109 NA non-coding upstream 67241 17009574 ~ 17009798 (+)
LOC111196035 NA non-coding upstream 178645 16883025 ~ 16898394 (+)
G216941 smap1,LOC107588664,LOC107694205,LOC107585328 non-coding upstream 357558 16560852 ~ 16719481 (+)
G216953 NA non-coding upstream 589501 16485902 ~ 16487538 (+)
G217140 NA non-coding downstream 156423 17264130 ~ 17264431 (+)
G217222 NA non-coding downstream 287332 17395039 ~ 17395249 (+)
G217313 NA non-coding downstream 669059 17776766 ~ 17777086 (+)
G217359 NA non-coding downstream 992247 18099954 ~ 18161772 (+)
G217362 NA non-coding downstream 1009495 18117202 ~ 18124261 (+)
borcs7 borcs7 other upstream 69502 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 2296726 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 2729706 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 3326733 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 3592668 13479176 ~ 13484371 (+)
LOC111195981 tacc2 other downstream 41635 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 896546 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 1204186 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 1635499 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 1729637 18837344 ~ 18847028 (+)

Expression


Co-expression Network