LOC111195981 (tacc2)


Basic Information

Item Value
gene id LOC111195981
gene name tacc2
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17149342 ~ 17184251 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684740.1
GGCCACATCACATCTGCAGAGGTTCTGCTGCAGTCTTgcagtataaaaaaatgtgtgagaaattcctttttttctgcCCCATTTCAGATGAGTGcttctttctgtgtttattttatttattaatttatttttttagaccttTTCACTTGGGACTCAGCACAGTGTTATCCAGCCTGCGGCTGTGGCCCCTTTAAAACCGCAGATGTTTTCTTGCTCTCTGTCCTTTCAACTCTTCTagtctagctctctctctctttcctctctctctctctgtgcgtcTCTCAATGTTGTACCCCCTCCTTTTCCTGTTCATGTATGTTAAGTGTTTCTATGGGAAACAGAGGGGCTTTTCTACCCATGTGCAGCGTCTATAGGCTcggaaaatggatggatggagggaaggAGAGCACGACCCACCTTTCACTTTGGTTTCTTCAACTGTTCTATTTATAACACAGCATTCTTATATAATATGGCATGGAGATGTATGTCATAGATGTACCCTGGGCACTGCTGTAGATGAGGCTTATTAGTCACACATTGCCTTGCAGACTtgtacactcactcacacactcactcactcactatctccctcacacacatacacacacacacttgcactcaCTTGCTCACATGCATCCTAGCCAGCTCTGCGATGCCATATCTGTGTAGTAGTGGCGATGCAGTTCTGCAGGCAGTATCTCTGCAAGCCTTGTAGTGCTGCTGTTACGTCTCCTCAGGAGGACATGGAATACAGGATGGGGAGCTGCATAGGAGTCGTACGGAACCAGGAGGGCGCCACGGACAGTGTAGTGATCTTTCCTCCTCAGGAAACACAGTCTGGATCAGCATTTGAGGCTGATATTCACGCAGAGAGAGTTGCTCCGACGAGGGATAAACCCAACAGTGCAGAGAACGGATTACTTCAAACTGAAGCTCAGCCCAGCCGCAGTACTGCAGAAGAGGCACAGAGCCTTGCTCACGAGGAGCAGAACCAGGGAGAACAGGAAGACGAGCTTGAGTTTCCGCATGACCTTCTACCGTGTATAGATCTAAGCACTGAGCTCAACCTCACCTGGGGAGCTTCACTCGGCAGTAAACAGGTGGAATCAGATGAGAAGAAGAATGAGCCAGTGTCACTAAGTGAGCAAGTTAACCCCCTGCTGGTTGGACTGCAACATTACATGGAGTCCAGTTCACCAGTAGTGGGCCTCATAGAGAGCCATGATGGAGGCTCATCTCCACCACAGCCGCAGTCAGACAGAGTGATTCAAGAACCATCAGTCATGTCATCACACCAGATTTCAGCCGCTCTTCTGGACCTCGAACTCGAAGAAGCCTTTAAAACATGCGAGGAACAAATGGCCTCTTTTGACGTAACCTCTGACTTGATCACTTCCAACACCACAGATCAGACTGACACATGTCTGTCAGTGCCTCTGCCTGACTCTGAAGATGAGGATGAGCACACAGCTGTCAATGAGTGTCATGTGTCGTCGCCACTGCCGCTTCCTGAATCTCAAACAGGATGTGACATGAACAGGCATGGAAATACTGGAGTGCAAACAAATCATGCAGTAGGTTGCAGAGAGGAGGTTGTGTTCAGCTTCAAAGACTATATACTTGGGAATGCACAGGCAGAGACCGTCAGTGTGAAAACTACTAATAAAAGTATGGAAGTGTTAGGAAATAACATGGAAAGTACTCCTAATATGGAACATATAAAAGACAGTAATGATGAGTCAAAGTCTGACAAAATTGAAATGAGACaggaagaaataatgaaaaagatctCAGTCACTGAGGCAAATGTCCAGGTTCAATCAAAggacacacatacagtactagAAGCTACAGAAGGTGTCACCTTGCAAGTTAACCAAGACTCCCCTAAGAAAGTGACACATGAGGAAATAAGAGGCATTAAAAGAACTGGTTCACAGGGCACAGAAACAGAGACAATCAGTGTGGAAGCTACTGAAAATCTGAAAGTATTAAGGGATGAACATATGAACGAGACTgagaaagaaacaaaggctGATGAAAATGGAAAGAGACCAGAAGAAATCATGAAAAATAGCTCAATTTCTGAAGCAACGATTGAGGTTCaatcaaaagaaacaaataaagcaCTGAAAGCAACAGTATCCAAGCTACATAACCAAGAAATACCTGATGATGAGGTTCAACCAAAGACAACAACTGAAGCATTGGAAGCACTGGAAGGTTTCACTTTGCTTGATAACCAAGGCTTACCTAAGGAGGTGTGTACAAATATAGCATGTACACAGCAGGATACAGGAGACATTCAAAGAACTGGCTCGCAGGAAGATTCACAAGTTAGTTTtgccaaaaacacagaaacaaaggcAATCAGTGTGGAAGCAACTAATGAAAATATGAAAGTATTAAGAAACAGTGTGGAAGGCAAGCTAAAGACAGAACATACAAAATATAATGATAAAGAATCAAAGACTgaagaaactgaaaaaatacaaGAAGAAATACTGAAAAATAGCTCAGTCACTGACCCAAACACTGAGGTTCAaccaaaaagaaacaaatgaagCACTGGAAGAAACAGTATCC
>XR_002651919.1
GTGCAGGAAAGGGGGAGGGCTTTTCCTCAAGTTGCTTGTGTTTGTCTCAGTGAGTCTCAGGCGAGCCGGCACCTTCTCCTTTAGCCTGTGAAGTGCTGGCTGTGAACAGTTCtgtccttcttttcttttctttgtttattttgttttttactgacttacacTGTAACACAGTCTTGGTGTAGTGCACTTATCCATTTGCCCTGAATGGGGTATGGATCTTTAGCACTAGGGGAGGTGAGCTGAGTCAGGACACTGAGGCCCTGGAGCATgtgctactactgctgctgctgctgctgcctggcTGGTGGCATCACAACACACCTTCAGCCTGACTTTACTGCACTCTCACACTACTGTGTCCTACCGCATGCGTGTGTGTTCTCCTCTAAACCTCCTCTAAGGCTGATATTCACGCAGAGAGAGTTGCTCCGACGAGGGATAAACCCAACAGTGCAGAGAACGGATTACTTCAAACTGAAGCTCAGCCCAGCCGCAGTACTG

Function

symbol description
tacc2 Is expressed in several structures, including anterior neural keel; axial chorda mesoderm; nervous system; tail bud; and trigeminal placode. Orthologous to human TACC2 (transforming acidic coiled-coil containing protein 2).

NR:

description
PREDICTED: transforming acidic coiled-coil-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684740.1 True 2589 mRNA 0.44 5 17149342 17184251
XR_002651919.1 False 501 misc_RNA 0.50 2 17167018 17175733

Neighbor

gene id symbol gene type direction distance location
nsmce4a nsmce4a,LOC108262367,LOC107716332,LOC107688307,LOC107707575,LOC107585317 coding upstream 3454 17140671 ~ 17145888 (+)
LOC103040130 NA coding upstream 19236 17109263 ~ 17130106 (+)
ldb1 ldb1,ldb1a,LOC108442788,LOC108444470,LOC107585322,LOC107673939,LOC107707596 coding upstream 41635 17077039 ~ 17107707 (+)
polr1c polr1c coding upstream 81701 17063896 ~ 17067641 (+)
LOC103037825 ina coding upstream 93297 17051980 ~ 17056045 (+)
LOC103040431 NA coding downstream 2890 17187141 ~ 17261572 (+)
unc5b unc5b,LOC107588651,LOC107707543,LOC107688303 coding downstream 296160 17480411 ~ 17575186 (+)
LOC103043107 LOC108442891,LOC108263542 coding downstream 394947 17579198 ~ 17632034 (+)
parg LOC107683745 coding downstream 449525 17633776 ~ 17672861 (+)
LOC103043721 ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 coding downstream 492903 17677154 ~ 17700496 (+)
G217122 pcgf6 non-coding upstream 88761 17058330 ~ 17060581 (+)
G217109 NA non-coding upstream 139544 17009574 ~ 17009798 (+)
LOC111196035 NA non-coding upstream 250948 16883025 ~ 16898394 (+)
G216941 smap1,LOC107588664,LOC107694205,LOC107585328 non-coding upstream 429861 16560852 ~ 16719481 (+)
G216953 NA non-coding upstream 661804 16485902 ~ 16487538 (+)
G217140 NA non-coding downstream 79879 17264130 ~ 17264431 (+)
G217222 NA non-coding downstream 210788 17395039 ~ 17395249 (+)
G217313 NA non-coding downstream 592515 17776766 ~ 17777086 (+)
G217359 NA non-coding downstream 915703 18099954 ~ 18161772 (+)
G217362 NA non-coding downstream 932951 18117202 ~ 18124261 (+)
borcs7 borcs7 other upstream 141805 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 2369029 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 2802009 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 3399036 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 3664971 13479176 ~ 13484371 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 820002 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 1127642 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 1558955 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 1653093 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 1976402 19160653 ~ 19216989 (+)

Expression


Co-expression Network