LOC107197625 (vstm4)


Basic Information

Item Value
gene id LOC107197625
gene name vstm4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18975059 ~ 18990050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684784.1
aagagtgagggagagaggggtgTTTCTAACTGGGAACAGAGCACGCACTGTTTCACAttactcacacagacacacatatacacacacacacacacactcttacacacacacatacgcacggTGAGaaggagaaagggagagaaaaagggGAGAAAATCCCAGGCACTTTCTTCTTGTGCTTGTTTAGCTGGGTGTATGGAGCCTGTGGGTCTGCAAAATGAAACTCTCATGTGTTCTGATAGTTCTCCTGACTAAGGCCTTCATTGAAGAGTTGGCTGAGGCTCTGAACGTGTCAGTGACCCCTGGGCCGGTCAGTATGTGTATGGAGGAAGAGAATATCACCCTGTCCTGTCTGGTGTCTCAGAGGAAAAGGACCAGCAGTGTTCTGGTTCTGCGCTGGCTCTACTTTCCCACGCCCGAAGACGAGCGCCTGGTGGTGAAGATGAACTTCAAGAAGGCCAAGTTTTATGGAAACTACAGCAAAAGCTTCGGCCGGCCCAAGTTTCACATGTGGGAGGAGATGGAGGGGCAGGTGTACAGTCTGCTGATCCTTAACGTATCCAGAGAAGACAGAGGCAATTACACCTGTAAAGTGCAGGAGATACGCAAACAGAGAGACAAGTGGAGGGCCTCGTCCAACGGCACAGGGAGCATGGAGCTTCGAGTGCACTATATAACAGCCTCAGAGAGAACGGATGATATATGGCGCTTGTTTCAAgCGAGTTTCTATTTGGTGAAGTGCTCTGAGAGCAGCTCTGGGGAAACAGTGACCAGTGTGGCCAGCTCAGATGCCAGCTCGCCTGGAATGCACAGGAAAGAGAAGAGACACAAAACATCGCCCAAATACATCACTGCACCACCTCCACAAATACCAAGGAAAGctCCAAATAAGCCGCGCAGAACCAAACTTCTAAAAGCTCAGCCTAAAAGAGCGTACACGCCGAGGGTGGCAGATGACAGCCTGACAtatgctgagctggagctggtcAAACCGTTGCCTGAAGCTAAAgccagcagcagcggcggctcAGTTACTGCACAGCTGGATCCCAATGCAAACGGCACAGGAACTGTATACGCCCAGATCCTCTTTGTGGAAAAGCAAGTGTGAACGCAGCTGAGACTGTTCTGAACCAGAATTATTTATGAGATCTCAGTTCActattgtgtgtatgtacagtatgtttgacTGATTATTTAgcagttttgcataaataatttatgttataatGGTACTGGTAAAACATCTGGcagatgtgtgttttatttcatttcttttctactTCTAGGGCACATTCAGCACTGTGCCTGTGAGCTCatggtgtattttttaaatctaatgaTATACGACTAGATGTgttacatttattctttttgttaaaaaaaagacaataagaaagaaaggaaagaaaggatCACGAGTGGCACAGCCGTCTGAGTGCTGGCAATAttattgggagattgctggctCGATCCCCAGTGATCCCAAGCCATCTGTGGATGTGTATCACAAAGAGCGCAGGACTtggcctttttctctctctgggggTGCGTGGAATGGCCCTCCCTCTCCCCCATAAAACACAGACTGGTAACAGAACTCTGGTGTGTTCAGCTGGCAATAAAGTTGTGATAGGAGGAATTTAGAAACGTGCTAAAAAAGAAGCTACTGGGTGATAATTGGTCATGATTGAAAACAGgattaaaattgtataaataaaaacatatattatacagtgaTTGATGCATATATATCTGATCTGTATGttatcccatttttttttctatttgagaTTCTATTTGACATTCACCACTGTGTCTGTGAACTGAagatatacatttttcttttttttttttacaaaatataatttgcaaTATTGTtggatttaattaaatatactgtacgtatttaattctgattatattggtaaaatgtataatataatgtgtgtgATAGTAAAGATTTTCAGCTTTTCAAA
>XM_022684785.1
TGTATGGAGCCTGTGGGTCTGCAAAATGAAACTCTCATGTGTTCTGATAGTTCTCCTGACTAAGGCCTTCATTGAAGAGTTGGCTGAGGCTCTGAACGTGTCAGTGACCCCTGGGCCGGTCAGTATGTGTATGGAGGAAGAGAATATCACCCTGTCCTGTCTGGTGTCTCAGAGGAAAAGGACCAGCAGTGTTCTGGTTCTGCGCTGGCTCTACTTTCCCACGCCCGAAGACGAGCGCCTGGTGGTGAAGATGAACTTCAAGAAGGCCAAGTTTTATGGAAACTACAGCAAAAGCTTCGGCCGGCCCAAGTTTCACATGTGGGAGGAGATGGAGGGGCAGGTGTACAGTCTGCTGATCCTTAACGTATCCAGAGAAGACAGAGGCAATTACACCTGTAAAGTGCAGGAGATACGCAAACAGAGAGACAAGTGGAGGGCCTCGTCCAACGGCACAGGGAGCATGGAGCTTCGAGTGCACTATATAACAGCCTCAGAGAGAACGGATGATATATGGCGCTTGTTTCAAgatctgtatctgtgtgctGTGTTCATCTGCTCTCTTGGTCTTCTTTGTATGCTTATCTTCGCTGTGTTCATCACATGCCAGCACATACAGCGCAAACAGCGACTAAAAGCGAGTTTCTATTTGGTGAAGTGCTCTGAGAGCAGCTCTGGGGAAACAGTGACCAGTGTGGCCAGCTCAGATGCCAGCTCGCCTGGAATGCACAGGAAAGAGAAGAGACACAAAACATCGCCCAAATACATCACTGCACCACCTCCACAAATACCAAGGAAAGctCCAAATAAGCCGCGCAGAACCAAACTTCTAAAAGCTCAGCCTAAAAGAGCGTACACGCCGAGGGTGGCAGATGACAGCCTGACAtatgctgagctggagctggtcAAACCGTTGCCTGAAGCTAAAgccagcagcagcggcggctcAGTTACTGCACAGCTGGATCCCAATGCAAACGGCACAGGAACTGTATACGCCCAGATCCTCTTTGTGGAAAAGCAAGTGTGAACGCAGCTGAGACTGTTCTGAACCAGAATTATTTATGAGATCTCAGTTCActattgtgtgtatgtacagtatgtttgacTGATTATTTAgcagttttgcataaataatttatgttataatGGTACTGGTAAAACATCTGGcagatgtgtgttttatttcatttcttttctactTCTAGGGCACATTCAGCACTGTGCCTGTGAGCTCatggtgtattttttaaatctaatgaTATACGACTAGATGTgttacatttattctttttgttaaaaaaaagacaataagaaagaaaggaaagaaaggatCACGAGTGGCACAGCCGTCTGAGTGCTGGCAATAttattgggagattgctggctCGATCCCCAGTGATCCCAAGCCATCTGTGGATGTGTATCACAAAGAGCGCAGGACTtggcctttttctctctctgggggTGCGTGGAATGGCCCTCCCTCTCCCCCATAAAACACAGACTGGTAACAGAACTCTGGTGTGTTCAGCTGGCAATAAAGTTGTGATAGGAGGAATTTAGAAACGTGCTAAAAAAGAAGCTACTGGGTGATAATTGGTCATGATTGAAAACAGgattaaaattgtataaataaaaacatatattatacagtgaTTGATGCATATATATCTGATCTGTATGttatcccatttttttttctatttgagaTTCTATTTGACATTCACCACTGTGTCTGTGAACTGAagatatacatttttcttttttttttttacaaaatataatttgcaaTATTGTtggatttaattaaatatactgtacgtatttaattctgattatattggtaaaatgtataatataatgtgtgtgATAGTAAAGATTTTCAGCTTTTCAAA

Function

symbol description
vstm4 Predicted to be located in extracellular region and plasma membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684784.1 True 1979 mRNA 0.44 7 18975059 18990050
XM_022684785.1 False 1895 mRNA 0.43 8 18975251 18990050

Neighbor

gene id symbol gene type direction distance location
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289 coding upstream 27048 18942248 ~ 18948011 (+)
ercc6 ercc6 coding upstream 36606 18909946 ~ 18938453 (+)
c25h10orf10 LOC103031081 coding upstream 242538 18731597 ~ 18732521 (+)
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding upstream 334184 18636068 ~ 18640875 (+)
LOC103028339 LOC108443181 coding upstream 340456 18376648 ~ 18634603 (+)
LOC103032870 NA coding downstream 27257 19017307 ~ 19019746 (+)
LOC103033826 LOC108443358 coding downstream 90675 19080725 ~ 19089231 (+)
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding downstream 105700 19095750 ~ 19144236 (+)
LOC103036761 LOC108442312 coding downstream 273926 19263976 ~ 19269426 (+)
LOC103037070 antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351 coding downstream 290120 19280170 ~ 19316024 (+)
G217472 NA non-coding upstream 35156 18939025 ~ 18939903 (+)
G217439 NA non-coding upstream 201648 18718305 ~ 18773411 (+)
G217442 NA non-coding upstream 224979 18747392 ~ 18750080 (+)
G217438 NA non-coding upstream 260749 18714051 ~ 18714310 (+)
G217435 NA non-coding upstream 275908 18697993 ~ 18699151 (+)
LOC111195980 NA non-coding downstream 229463 19219513 ~ 19231760 (+)
G217696 NA non-coding downstream 282887 19272937 ~ 19273154 (+)
G217715 zdhhc16,LOC108443446 non-coding downstream 372628 19362678 ~ 19365255 (+)
G217768 NA non-coding downstream 508014 19498064 ~ 19518320 (+)
G217784 NA non-coding downstream 594031 19584081 ~ 19584405 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 128031 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 230732 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 657831 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 935707 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1790808 17149342 ~ 17184251 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 170603 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 333856 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 1030364 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 1345897 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 3070913 22060963 ~ 22098259 (+)

Expression


Co-expression Network