LOC103046574


Basic Information

Item Value
gene id LOC103046574
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 41184961 ~ 41193209 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684797.1
GAGATAAATGAAGAAGAGACAGCTGAAGATGAGCTCTGACCCTGGTCCAGCCTTCATCCTCTGAGAGTCTCAATGACTCATTGAGCTCAGAGAGATGAGAGGTCTGGAGGATGATGCAGACAAATCATAACGTTTGACCTTTAGTTTGGAAAAAATGACCATGATGATCCTCAACTTCAGCTCTATCGCTGGACTCCTGCTCACTCTGACTGGTCTGTCTGCGTACACACTGACCCAGGAGAAGTCCATGTCAGTGACCCTGAAGAGCACAGTGAAGATACTCTGCACTGCAGAAGatgataataaatacatttcatggTACCAACAGAAAGCTGGTGCTGGACCTCAGTTTCTGTTGCGAAATGATATGAGAGCAAATAATTTACCCAGCAGATTCACCTACACCGACTCAGGCAACCAGGACTATCTGAACATCAACGGAATAGAAGCTGAGGATGAAGCCACCTACTACTGTGGCCGCATTAGCAGtgcacacaATACAACTTTTGGCCAAGGCACGACTGTCGTGATCTCTAACCGTCCAGCGTCTCCTCCATCAGTGGTCCTGCTGTCCCCCTCTCAGGGGGGCTCCTCTGGAGGTgaggtcagtgtggtctgtGTGCTGCAGGGCTTCTACCCTGACAGCGTCACTCTGTCCTGGGCTGAGGACGGCAGAGCCGTGGCCGGTTCTGAGGTCCAGACCGGACCGTCCCGGCGCCGGGCCGACGGCACCCTGTCCCAGAGCAGCGTCCTGAAGCTGAGCGCGGGACGCTGGAGCTCCGGACACGCCTTCACCTGCAGAGTGACCCATCCTGCACTGACCAGCCCACTGACCAAGAGCACCAGTGCAGCACAGTGCAGCTAGAGCCATCACATAATAATACACTCACATACATTTAATATAgcacgctaatgctaatgctaacacagctagctatgtatttgtttataaataaaagttacaATAGAGGTATATGGTTTATTTACTGTGCTATGCTATgctagtataataataatgtactgcTG
>XR_002651928.1
aaccactgtctctctctctctctcgcttcagTTTGACCTTTAGTTTGGAAAAAATGACCATGATGATCCTCAACTTCAGCTCTATCGCTGGACTCCTGCTCACTCTGACTGCAGGTCTGTCTGCGTACACACTGACCCAGGAGAAGTCCATGTCAGTGACCCTGAAGAGCACAGTGAAGATACTCTGCACTGCAGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684797.1 True 1026 mRNA 0.50 5 41184961 41193209
XR_002651928.1 False 198 misc_RNA 0.49 2 41189350 41190879

Neighbor

gene id symbol gene type direction distance location
LOC111196049 NA coding upstream 86133 41089502 ~ 41098828 (+)
LOC103045354 fndc5,LOC108237574,LOC107575402,LOC108238726,LOC106589070,LOC102792536 coding upstream 176923 40986174 ~ 41008038 (+)
LOC103047342 NA coding upstream 967925 40208406 ~ 40217036 (+)
eif3l eif3l,LOC102789421 coding upstream 977832 40198388 ~ 40207129 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding upstream 1074286 40086085 ~ 40110675 (+)
LOC111195996 NA coding downstream 2776 41195985 ~ 41198825 (+)
LOC103044280 NA coding downstream 83776 41276985 ~ 41279078 (+)
LOC103042542 NA coding downstream 94752 41287961 ~ 41294250 (+)
LOC103043683 NA coding downstream 1022534 42215743 ~ 42222054 (+)
LOC103047539 NA coding downstream 1518251 42711460 ~ 42721934 (+)
G223041 lbh,LOC106611122,LOC103378842,LOC106601624 non-coding upstream 343 41065420 ~ 41184618 (+)
G223025 NA non-coding upstream 165210 41018974 ~ 41019751 (+)
G222977 NA non-coding upstream 202236 40888917 ~ 40982725 (+)
G222952 NA non-coding upstream 550851 40555173 ~ 40634110 (+)
G222959 NA non-coding upstream 562315 40622313 ~ 40622646 (+)
G223079 NA non-coding downstream 89400 41282609 ~ 41296929 (+)
G223086 NA non-coding downstream 111773 41304982 ~ 41305256 (+)
G223090 NA non-coding downstream 248311 41441520 ~ 41443057 (+)
G223092 NA non-coding downstream 312852 41506061 ~ 41515273 (+)
G223130 NA non-coding downstream 792355 41985564 ~ 41985824 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other upstream 111645 41065658 ~ 41073316 (+)
LOC103047655 NA other upstream 832305 40349807 ~ 40352656 (+)
zfyve21 zfyve21 other upstream 845309 40331073 ~ 40339652 (+)
G222694 ppp2r5e,LOC102786035 other upstream 1470946 39678502 ~ 39714015 (+)
LOC103047486 LOC108443507 other upstream 1913823 39197707 ~ 39271138 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other downstream 1050602 42243811 ~ 42371581 (+)
G223269 NA other downstream 1970072 43163281 ~ 43166134 (+)
G223335 micu1 other downstream 2418414 43611623 ~ 43615389 (+)
mcu mcu other downstream 2486942 43680151 ~ 43769000 (+)
mcph1 mcph1 other downstream 3702968 44896177 ~ 44947346 (+)

Expression


Co-expression Network