LOC103037070 (antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351)


Basic Information

Item Value
gene id LOC103037070
gene name antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19280170 ~ 19316024 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684798.1
GGTTGTGTAGAGGAAGGCTGTTCCACTATGTTTTGGAAGCGCCGGACTCCCGCATCACTCGGCCGTTTAAAACCGTGACAGAACGAATCAGTGTCAGGTTTGCGGAATACATTTGCCGGTAGAGATTTATTTCCTCTCTGGGGGATTATGTGAAGGCCTACTTTTGCCGTGTGTCTGTccttttttggggaaaaaagtgtGTGGAAAAGATGGCGCGCGTGCTGGCTAACTTTGGTCTGGCTGTGGCGGTGGTGCTGGTCGCGCTGGTGCTGTTCAGACTTCCACACGGTGCAGCCGAGCCCAGTGTCAGCCCGGAGGAGAGGTCCTGTCAGGGTGCCTTCGACCTGTATTTTGTCCTCGACAAGTCTGGAAGTGTCAAAAACCACTGGATTGAGATCTATTCGTTTGTGGAACATCTAGCAGAAAAATTCATAAGCCCAATGCTAAGGATGTCATTCATTGTCTTCTCTACTCGTGGAAACACCATAATGAAACTAACAGAGAATAGGGGTGAAATTACCAAAGGCCTGAACATACTGAAAAAAGAGGTACCGGGTGGTGACACGGCTATGAATCTTGGATTGCAGAAGGCCAACGAGCAAATATATTATGGAAATTATGGGACAGCCAGTGTAATCATTGCTCTGACGGATGGAGAGTTAAATACAAATCAGTTAATCACAGCCCAGCAAGAGgcACAACGGGCCAGGTCTTTGGGAGCCATAGTGTACTGTGTGGGGGTGAAAGACTTCGATCAGGCACAGctggccACCATTGCAGACACGATTGAGCATGTGTTTCCTGTTGTGGGAGGTTTCCAGGCCCTGAGGGGAATGATTGATTCTatcatcaAAAAGTCGTGCATTGAGATTTTGGCAGCCGAGCCCTCaagtgtgtgtgctggagAGTCCTTCCAAGTGGTAGTGAGGGGAAATGGATTTTTGTACGCTAGAAACATCAATCAGGTCTTGTGCAGCTTCAAAATCAACGACACAGTCACTGTGGACGAGAAACCTGTAAACATCGAAGACACACTCCTGCTTTGTCCAGCACCGGTGATAAATGAAGTCGGGAAGGTGATTTATCTCCAGGTCAGCATGAATGAGGGCTTGTCCTACATCACTAGTGCAGTgcacatcactaccacagaaTGTTATGATGGCACCATCGTCCTCTTGGCATTGATGGTGATCTTTCTGCTGGTGGGTTTGCTGCTGCTGTGGTGGTTCTGGCCTCTGTGCTGCACTGTGgTAATAAAAGAGCCACCTCCACCTCCCCCACCTGAGCCTGAGTCTGAGGATGAAGATGGGATGCCAAAGAAGAAGTGGCCTACAGTGGATGCCTCATACTATGGGGGCAGGGGAGTTGGAGGCATTAAAAGAATGGAGGTGCGATGGGGGGATAAAGGCTCTACTGAAGAAGGGGCTAAGCTGGAGCTGCCTAAAAATGCAGTGGTGAAGATGCCTGAACATGAATTTGAGCCATTTGAGTCCAAGCCCATGAGGACTCCCAGAAGCCGGGCCTCCTCGAGGAGGAGGTGGTACACTCCTATTAAGGGAAAACTAGATGCTCTGTGGGCACTGTTCCGCCGTGGATACGACCAAGTGTCACTCATGAGACCCAAGCCTGGAGATCAGGGTCGATGCATCAACTTCACACGAGTAAAAGAAGCAGCAGCCAGCGCACCAGTGCACCAACCTCCACCGCCCCCACCAGACCATCAGCCCCTCATGCGCCCCACCACCTCAGCCCCTCCCAGCAGACCACCCTCCCGCGGACCCTCTATCAGCCGGACACCCCATGGACCCCCACCAGCCAGAGCACCCCCAGGCCCCCCAAGACAGCCTCCCTCTCGCCCCCCACCTTGCCCTGGGAACCGGCACTGAGAACAATGGGGAACCTTTATCACTCTAAATTCTCTGCCTTTACCAACATAAATGCTGGTATTTATCTTTAAGCCACTGGCTTGCAGCgctaacattttttatatttgttgctggacagcaaaaaagaaaaatcacatctaaaactacagtttattcttaaagGTACTGTAGTTTGGATGGATAGGATTGTACAGTCTGTCTTAAGTTGGGTTTTGGATCTGCTGTAAAGACAATTTGACTTTTTTGTCGTTGGCTTTGGTGAGTTTAGAAGTTTAGGTCCGTgggtgtatatatttttggaaaagcagcattctgttttattttagaggCTTATGAATATTGATGAGTGTGGTTTAGTAGGTCAGATCAAGCATAATGTTAATTATTGAATGTTGAATGTGACTAAATGACTGAATGTTTATGCTGAAAGttgaaagatagagagaattcaaactgaatttttaaactgaaaggaATGGAGCAAGTGCAGGTTGGTCAGCTGTAAGATATTCCTCATGCTTTAAATGCAATATCCTCAGATCACCTAGTTACACCCATACAAACAGAATAATTGCAACTGCGGGTCAGTTTTATCCTCTTAATTTATTTAGCCTTGGTTTCCTGGAAGGCACTTGAGCACAGACAGGGTGTCCATCGTTATTATGGGACACTAAGCATTGGACACAGTTTCAACTGACCCCATCTATTTTTATAATCACCAGTGCTGCCTTTctgttgtgtgcattgttgCTTTGTATTGTTGTGGTATTTGTAGTTCCATTCTGTGGTATAGGTTTGAGATTGGAGCGCTGTGCATGTGACAAAATGGGGTGGGTATGGGGGTGACCCTTTTACATATAATGCTTAATCTACCAAAGCCaaaacatgcattaaaaaagGTCTTATGTAAAACAGTGGAAATCCTGTAGGGCAGAATTGGTTGTTCTCAATTGACACTAATGCTACCGACTGAGTAAATATTGTTgccaaatattaaacattttgtaaCCCTCAATGTGTGGAGTTATATGTCTTTAAAACAGTAAGTGTATGAATTTGATTACAGCAAGGAGTTACCAGGTCatgtacacactgcttttggactgCCCAGAAGTGAtgttatttctttgttgtttctcagtctggtctggtctggggTCCTGCTTCCTTTCATTCCGCACATGCTTTCTGCATAACTGTGGGGCAGTCTGAAGTGACACTGGAGAACTGCAAACACACTGCCTGCATATATACACAGCTATTGCAGAAATACACTTCAGGTTTTCCTCTACTTCACCTACTGAGGTTGAGTAATTTACAGTTATGAATAAGATTAAAGGGATCTCTTGTGTA

Function

symbol description
antxr1d Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to human ANTXR1 (ANTXR cell adhesion molecule 1).

NR:

description
PREDICTED: anthrax toxin receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684798.1 True 3239 mRNA 0.46 19 19280170 19316024

Neighbor

gene id symbol gene type direction distance location
LOC103036761 LOC108442312 coding upstream 10744 19263976 ~ 19269426 (+)
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding upstream 135934 19095750 ~ 19144236 (+)
LOC103033826 LOC108443358 coding upstream 190939 19080725 ~ 19089231 (+)
LOC103032870 NA coding upstream 260424 19017307 ~ 19019746 (+)
LOC107197625 vstm4 coding upstream 290120 18975059 ~ 18990050 (+)
mettl18 NA coding downstream 56549 19372573 ~ 19374811 (+)
marveld1 marveld1,LOC107665576 coding downstream 68125 19384149 ~ 19387991 (+)
LOC103037144 LOC108443489,LOC103368019,LOC106916418,LOC106964416 coding downstream 458292 19774316 ~ 19804731 (+)
slc25a28 slc25a28,LOC107601050,LOC107719215 coding downstream 692146 20008170 ~ 20019444 (+)
got1 got1,LOC107665595,LOC107586067,LOC107702745,LOC107601049 coding downstream 775187 20091211 ~ 20101103 (+)
G217696 NA non-coding upstream 7016 19272937 ~ 19273154 (+)
LOC111195980 NA non-coding upstream 48410 19219513 ~ 19231760 (+)
G217472 NA non-coding upstream 340267 18939025 ~ 18939903 (+)
G217439 NA non-coding upstream 506759 18718305 ~ 18773411 (+)
G217442 NA non-coding upstream 530090 18747392 ~ 18750080 (+)
G217715 zdhhc16,LOC108443446 non-coding downstream 46654 19362678 ~ 19365255 (+)
G217768 NA non-coding downstream 182040 19498064 ~ 19518320 (+)
G217784 NA non-coding downstream 268057 19584081 ~ 19584405 (+)
G217787 NA non-coding downstream 282954 19598978 ~ 19599243 (+)
G217790 NA non-coding downstream 295215 19611239 ~ 19620647 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 63181 19160653 ~ 19216989 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 433142 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 535843 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 962942 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 1240818 18004253 ~ 18039352 (+)
rrp12 rrp12,LOC106529656 other downstream 7882 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 704390 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 1019923 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 2744939 22060963 ~ 22098259 (+)
G218351 NA other downstream 2901275 22217299 ~ 22218860 (+)

Expression


Co-expression Network