LOC103042035 (zgc:110045,LOC108444131,LOC107582498,LOC107721227,LOC107678543,LOC107708438,LOC108262845,LOC107698144)


Basic Information

Item Value
gene id LOC103042035
gene name zgc:110045,LOC108444131,LOC107582498,LOC107721227,LOC107678543,LOC107708438,LOC108262845,LOC107698144
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22379123 ~ 22394920 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684842.1
TCTTCCCATCCAAAATGATTTGACACAATCAGTTTGGAGATGACCGTGATGACAATCGAAGTAAAATACTGAATCTCCTGATGAACCTCCTGATGAACCTCTACTGTCACAACACTAACTGTGGGAGCATTAGGCAAAGTGAGGGACTCCAAGCTCGCTTGCCCTGCTGTATGAGCTTATCAGAGGCTAAGccagagggggaaaaaaaaacagtaaagctAGTCTCAGTCGGGCAGAGAGCTACGGGCACAAGGCCATCTGTCCATTCTCTGAATACAACTGACAACAAAGGAGGGCAATTCTTCATTACCCGGACCATACAGCCACTGGAGactcacacactcatgcacatTGTTGGAGAGACAAGGAGGACAAGAGGGACTGACACCAACCTACTGTAGCAACCTCTAGCTACTCAGCAGtgctgtcagtttttttttgtgtgtgcaaTGGCGACAGAGAGAGCTGTTTCTGCTCCTCAAACCTTATAGCCTGTCTGTCTGAAAGCGTGAAGTGTCCGGATCATCAAGGAGTATGAATATGAATGAGAAGGAGGGCGGCTTGTCTGGGGGAGGGCTAAATGTCACCCTCACCATCCGCCTGCTAATGCACGGAAAGGAGGTGGGCAGTATCATTGGGAAGAAAGGGGAAACGGTCaagaaaatgagagaggaaAGCGGAGCTCGAATTAATATTTCCGATGGCTCCAGCCCGGAGCGCATCGTCACCATCACTGGCCCCTCTGAGGTCATCTTCAAAGCTTTCGCCATGATTGCAGAGAAGTTTGAGGAGGATATCCTGGTGTCCATGGTCAACAGCACAGTGACAAGCAGACCCCCTGTAACTCTGAGACTTGTGTTCCCTGCCAGTCAGTGCGGCTCACTTATCGGCAAAGGAGGCTCCAAAATTAAAGAGATCAGAGAGaCCACGGGTGCACAGGTGCAGGTAGCTGGAGACCTACTGCCAGAGTCTACCGAGAGAGCGGTGACCATCTCGGGAACTCCTCATGCCATCACACAGTGTGTGAGGCACATCTGCACCGTAATGCTGGAGTCACCACCTAAGGGAGCGACGATTCCTTATAGGCCTAAACCTTCCTCTGGTGGCAACGCTACAATCTTATCTCAGCCACATACAGCTCCTGCCTTTGCTATTCCGGGACAGTACGCCATTCCCCCTCAAGACTTGACCAAGCTTCACCAGTTGGCTATGCAGCATATCCCCTTTACCTCCCTTGGGCAGAGCAACCCTACCTTCCCTGGTCTGGATGCCTGTGTTGCAGCAAGTTCTCAAGAGCTGACCATTCCTAACGATCTCATAGGCTGCATTATTGGCAGACAGGGCACTAAGATCAATGAGATTCGCCAGATGTCTGGAGCCCAGATCAAGATAGCTGGGGCCACAGATGGTTCGGCTGTGCGCCACGTCACCATCAGCGGGTCCCCGGCCAGCATTAGCCTGGCCCAGTACCTCATCAGTGCCAGTTTAGAGATGGCTAAACTCAGCATCCAGGCCGCCTCCACCTCTTCTTCCGGCAACCCTTTTGACCTCAGCCTGAGTTTCCCACAGTCCGCCACTCCcgcctccacctccaccccttCCTCCATGGCCATGCTGGCCGCTCCCCCCTCTGCCATTAACGTCCACTCCCCTCAGGCTATGCCCTCCATCTCCAGCTCCCACTACGCCCTCCCGGTCTCCAGTCTGCTTGGCATGAAAACCGTGCCCCTGCTGGCCGTGCACGCCGCCACCTCGGGCCTCGCCTCGTACACCACAAAGATCCCGACCTCGGCCACCATCAAAAAATCAGAGCGCCAGAAGTTCGCCCCCTACTGACCAGACTGCAGCAGCCTGTTTAATCTCTCCCTCctgtctgtgttgtgtgtgctgtttgtgttttgcatCTCTAAAGACTTTGAaggttgaatttttttttgttagcccTCTTTTTTTGGTACATCTCCATGCAGTATTATGCAAACGGATAGTGACAGAGTGACAAGATGAATTGCTCCTCAAATCATCCTCCATTTTCTTTGGCATCTCATTCGGAAATGTTTGAGATAGCAATCTCAAGCCATATATTTTATCTGACACGCCATTCTTTTCCCTTTTCAAATCCCCAGCCAATGAGACTATGGGGCATTGTATATGAAATCAAGCTCGAGCTCTTTATTTGCCTATTACTTACGACTTCTGTCAGGTTTCAGGTTCACGCATATATGTGATGATTAGGTTTTAGTAGAGAATGCACAGCTCTAATCTTCATTTTGTCTGCTTTACTTTGcagcatttctccaaaattagtCATGTTTGGCACACAATCTGCTAATTATGTCTCTTGTGCTTGTTTTCATCTTTCATCTTTATGGTATTAAAGCAGGGAAATGGAATTTGCTGTAGTTCACGctcaggacaaaaaaaaatacaaatcctGGCATTAATACAACACTTACTAACTATCCTGCTGTGCGGTTCCATGTACGCTGTGATACAAAATGTGTTTGTGATCGTTCTGTTATTAGTCCATCCAGAATGGGTGCCACAGTGCAgtgtatgtacagtaaatgACAGTGTAGGCCAGATTGAGGgcaattgtgtttttttgttgttcttttttttttgttcttccaTTAAACTGTAACTGTGAACTGATTCCCAAAACAGGTGCACTATACTCCGCTGGCAGAAGAGGAGATATATCTGTGTCATGACTGTTGCGAACTGTAGAAATGTGTTGTTGTTCCTGTGGAGCTGATGATGTGCTTCTTTCCTAGGCTGTCTGCACTGCTAGCTGGCCTGGGGCCTCTTTAGCCACGCAGCCTCTCATTAAAACTCTGACTGGATTACCCCAAAGCCATATGGAATTCTTAAGAACTCAGTTTTATTCAGGAGAACCAGGCTGCATGATATGCAAATTCACAAAATGTCTCACAAAACTTTTTAACAACAAAAATTGTGAAATGAAGTGTTATAACTAGTGCTGACCTCTTTgctatattctgttttttttattcactatttTATGTCTGTTCTGTATAAGAAATgtgcttgtgtttgtttgttttttaagtcaCAGTCCATGTTGTCTTTTTGagataaatgataaattaatgCTTTTTGTTCCTAAATGTAGAACTTACCAcatctttttaaattaaaatgtggcAGCTTTTTATTAGAAta
>XM_022684843.1
CCCATCCAAAATGATTTGACACAATCAGTTTGGAGATGACCGTGATGACAATCGAAGTAAAATACTGAATCTCCTGATGAACCTCCTGATGAACCTCTACTGTCACAACACTAACTGTGGGAGCATTAGGCAAAGTGAGGGACTCCAAGCTCGCTTGCCCTGCTGTATGAGCTTATCAGAGGCTAAGccagagggggaaaaaaaaacagtaaagctAGTCTCAGTCGGGCAGAGAGCTACGGGCACAAGGCCATCTGTCCATTCTCTGAATACAACTGACAACAAAGGAGGGCAATTCTTCATTACCCGGACCATACAGCCACTGGAGactcacacactcatgcacatTGTTGGAGAGACAAGGAGGACAAGAGGGACTGACACCAACCTACTGTAGCAACCTCTAGCTACTCAGCAGtgctgtcagtttttttttgtgtgtgcaaTGGCGACAGAGAGAGCTGTTTCTGCTCCTCAAACCTTATAGCCTGTCTGTCTGAAAGCGTGAAGTGTCCGGATCATCAAGGAGTATGAATATGAATGAGAAGGAGGGCGGCTTGTCTGGGGGAGGGCTAAATGTCACCCTCACCATCCGCCTGCTAATGCACGGAAAGGAGGTGGGCAGTATCATTGGGAAGAAAGGGGAAACGGTCaagaaaatgagagaggaaAGCGGAGCTCGAATTAATATTTCCGATGGCTCCAGCCCGGAGCGCATCGTCACCATCACTGGCCCCTCTGAGGTCATCTTCAAAGCTTTCGCCATGATTGCAGAGAAGTTTGAGGAGGATATCCTGGTGTCCATGGTCAACAGCACAGTGACAAGCAGACCCCCTGTAACTCTGAGACTTGTGTTCCCTGCCAGTCAGTGCGGCTCACTTATCGGCAAAGGAGGCTCCAAAATTAAAGAGATCAGAGAGaCCACGGGTGCACAGGTGCAGGTAGCTGGAGACCTACTGCCAGAGTCTACCGAGAGAGCGGTGACCATCTCGGGAACTCCTCATGCCATCACACAGTGTGTGAGGCACATCTGCACCGTAATGCTGGAGTCACCACCTAAGGGAGCGACGATTCCTTATAGGCCTAAACCTTCCTCTGGTGGCAACGCTACAATCTTATCTCAGCCACATACAGCTCCTGCCTTTGCTATTCCGGGACAGTACGCCATTCCCCCTCAAGACTTGACCAAGCTTCACCAGTTGGCTATGCAGCATATCCCCTTTACCTCCCTTGGGCAGAGCAACCCTACCTTCCCTGGTCTGGATGCCTGTGTTGCAGCAAGTTCTCAAGAGCTGACCATTCCTAACGATCTCATAGGCTGCATTATTGGCAGACAGGGCACTAAGATCAATGAGATTCGCCAGATGTCTGGAGCCCAGATCAAGATAGCTGGGGCCACAGATGGTTCGGCTGTGCGCCACGTCACCATCAGCGGGTCCCCGGCCAGCATTAGCCTGGCCCAGTACCTCATCAGTGCCAGCTTTATTAATACTCATCAAGGCATGTGAAACCCTTTTTTAATGGTTTGTTCCTTGTAACACGTAACATTTCCCTTTATTGattcttcttttttcatttgtctCACTTCCCCCATTCCACATCCACCTCTCTTGTTTCCCGCAACTACTCTATTAAACACACCCCTAACCCCCTCCTTCTTCCCTTCTTCCCTGTGGtgttggtatgtgtgtgtgtgtgtgtgtgtttgtatattgcgtgtgtgtg
>XM_022684844.1
TCCAAAATGATTTGACACAATCAGTTTGGAGATGACCGTGATGACAATCGAAGTAAAATACTGAATCTCCTGATGAACCTCCTGATGAACCTCTACTGTCACAACACTAACTGTGGGAGCATTAGGCAAAGTGAGGGACTCCAAGCTCGCTTGCCCTGCTGTATGAGCTTATCAGAGGCTAAGccagagggggaaaaaaaaacagtaaagctAGTCTCAGTCGGGCAGAGAGCTACGGGCACAAGGCCATCTGTCCATTCTCTGAATACAACTGACAACAAAGGAGGGCAATTCTTCATTACCCGGACCATACAGCCACTGGAGactcacacactcatgcacatTGTTGGAGAGACAAGGAGGACAAGAGGGACTGACACCAACCTACTGTAGCAACCTCTAGCTACTCAGCAGtgctgtcagtttttttttgtgtgtgcaaTGGCGACAGAGAGAGCTGTTTCTGCTCCTCAAACCTTATAGCCTGTCTGTCTGAAAGCGTGAAGTGTCCGGATCATCAAGGAGTATGAATATGAATGAGAAGGAGGGCGGCTTGTCTGGGGGAGGGCTAAATGTCACCCTCACCATCCGCCTGCTAATGCACGGAAAGGAGGTGGGCAGTATCATTGGGAAGAAAGGGGAAACGGTCaagaaaatgagagaggaaAGCGGAGCTCGAATTAATATTTCCGATGGCTCCAGCCCGGAGCGCATCGTCACCATCACTGGCCCCTCTGAGGTCATCTTCAAAGCTTTCGCCATGATTGCAGAGAAGTTTGAGGAGGATATCCTGGTGTCCATGGTCAACAGCACAGTGACAAGCAGACCCCCTGTAACTCTGAGACTTGTGTTCCCTGCCAGTCAGTGCGGCTCACTTATCGGCAAAGGAGGCTCCAAAATTAAAGAGATCAGAGAGaCCACGGGTGCACAGGTGCAGGTAGCTGGAGACCTACTGCCAGAGTCTACCGAGAGAGCGGTGACCATCTCGGGAACTCCTCATGCCATCACACAGTGTGTGAGGCACATCTGCACCGTAATGCTGGAGTCACCACCTAAGGGAGCGACGATTCCTTATAGGCCTAAACCTTCCTCTGGTGGCAACGCTACAATCTTATCTCAGCCACATACAGCTCCTGCCTTTGCTATTCCGGGACAGTACGCCATTCCCCCTCAAGACGTCTGGATGCCTGTGTTGCAGCAAGTTCTCAAGAGCTGACCATTCCTAACGATCTCATAGGCTGCATTATTGGCAGACAGGGCACTAAGATCAATGAGATTCGCCAGATGTCTGGAGCCCAGATCAAGATAGCTGGGGCCACA

Function

symbol description
zgc:110045 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus.

NR:

description
PREDICTED: poly(rC)-binding protein 3-like isoform X1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K21444 PCBP3_4; poly(rC)-binding protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684842.1 True 3186 mRNA 0.47 15 22379123 22394920
XM_022684843.1 False 1725 mRNA 0.50 15 22380846 22394916
XM_022684844.1 False 1320 mRNA 0.50 13 22382112 22394912

Neighbor

gene id symbol gene type direction distance location
vwc2 vwc2,LOC107589538,LOC107678488,LOC107698155,LOC107721217 coding downstream 19510 22328143 ~ 22359613 (-)
spata48 NA coding downstream 82351 22284552 ~ 22296772 (-)
ikzf1 ikzf1,LOC107698154,LOC107721232,LOC107708437,LOC107589539 coding downstream 104231 22250732 ~ 22274892 (-)
ttl ttl,LOC107678537,LOC107698152 coding downstream 145891 22222540 ~ 22233232 (-)
bag5 bag5,LOC107698150,LOC107708429 coding downstream 217535 22143477 ~ 22161588 (-)
lrmda cunh10orf11,c3h10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444,LOC105909757 coding upstream 451362 22846282 ~ 23286449 (-)
LOC103037680 vdac2,LOC108444242,LOC107747461,LOC107582506 coding upstream 1043736 23438656 ~ 23446125 (-)
zfand4 zfand4 coding upstream 1267778 23662698 ~ 23691895 (-)
washc2c NA coding upstream 1298336 23693256 ~ 23708270 (-)
LOC111195939 fam21c,LOC107678570,LOC107589565 coding upstream 1314365 23709285 ~ 23714358 (-)
G218388 NA non-coding downstream 174660 22202153 ~ 22204463 (-)
G218387 klc1 non-coding downstream 189532 22179388 ~ 22189591 (-)
G218386 apopt1,LOC107582494,LOC107698146,LOC107721215 non-coding downstream 212730 22164760 ~ 22166393 (-)
G218376 trmt61a,LOC107582491,LOC107698149,LOC107678528,LOC107589545 non-coding downstream 259060 22109175 ~ 22120063 (-)
G218374 NA non-coding downstream 279728 22099142 ~ 22099395 (-)
G218423 NA non-coding upstream 1172 22396092 ~ 22399546 (-)
G218435 NA non-coding upstream 11041 22405961 ~ 22407749 (-)
G218441 NA non-coding upstream 21978 22416898 ~ 22419373 (-)
G218448 anxa11,anxa11a,LOC108263209 non-coding upstream 46836 22441756 ~ 22451936 (-)
G218519 kcnma1 non-coding upstream 414899 22809819 ~ 22818104 (-)
G218329 eif5,LOC107589547 other downstream 322630 22051889 ~ 22056493 (-)
LOC103022835 NA other downstream 334011 22038423 ~ 22045112 (-)
G218240 NA other downstream 523982 21851372 ~ 21855141 (-)
LOC111195999 NA other downstream 621715 21708787 ~ 21757408 (-)
LOC103031576 cisd1,LOC105902329,LOC108443718,LOC107549159,LOC107747252,LOC107665600 other downstream 1172297 21160374 ~ 21206826 (-)
G218545 NA other upstream 449913 22844833 ~ 22846205 (-)
march8 march8 other upstream 1059255 23454175 ~ 23656986 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other upstream 1440859 23835779 ~ 23849800 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other upstream 1456043 23850963 ~ 23857507 (-)
G218781 NA other upstream 1660605 24055525 ~ 24056877 (-)

Expression


Co-expression Network