LOC103037680 (vdac2,LOC108444242,LOC107747461,LOC107582506)


Basic Information

Item Value
gene id LOC103037680
gene name vdac2,LOC108444242,LOC107747461,LOC107582506
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23438656 ~ 23446125 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684882.1
GATCTCGCCGCAGTACAGTCTCCTTCAGTTCGCCCTCCAGCCGGTGCGCTTCACCACAGACAGCAGCGTCGGGGAGAAGTTGATTAAACTTGTTTAAGTTGATCGCCAGACCAATATATTAACAGatATAATGGCTGTTCCCCCATGCTACGCTGATCTTGGAAAATCCGCCAAGGACATTTTCAACAAAGGATATGgTTTTGGTCTGGTGAAGCTTGATGTCAAGACAAAATCCTCCAGTGGAGTGGAGTTCAAGACTTCTGGGTCCTCTAATACTGACACCAGCAAAGTGGTGGGCAGCCTGGAAACCAAATACAAGAGGTCTGAGTATGGCCTGACCTTTACGGAGAAGTGGAACACTGACAACACTCTGGGAACAGAGATCACCATTGAAGATCAGATTGCAAAGGGGCTGAAGCTGACTTTCGATACGACCTTCTCACCAAACACAGGCAAGAAGAGCGGCAAAGTCAAGACCGCCTACAAACGTGAGTTTGTCAACTTGGGCTGTGACGTCGACTTCGATTTTGCCGGCCCAACTATCCATGGTGCCGCAGTGGTCGGTTACGAGGGATGGCTTGCCGGTTACCAGATGTCTTTTGACACAGCCAAGTCAAAGATGACCCAGAACAACTTTGCTGTAGGCTACAAAACAGGCGACTTCCAACTGCACACCAACGTGAACGATGGCTCAGAGTTTGGAGGTTCCATCTATCAGAAAGTGAGTGATAACCTGGAGACAGCAGTGAACCTGGCTTGGACTGCGGGCAGCAATAGCACACGCTTTGGTATTGCTGCTAAGTACCAGCTGGACAAGGATGCTTCCATCAGCGCCAAAGTGAACAACACTAGTCTTGTTGGTGTTGGTTACACGCAGACCCTGAGACCAGGTGTGAAGCTGACGCTGTCTGCCCTGGTTGATGGAAAGAGCATCAACGCTGGTGGTCACAAGCTGGGCCTggggctggagctggaggcCTAAAGCCCGGCTCTTCCTCAAATCAGGGACGAGGGAATATCAGAGGAATCTGGCCTTAAATCTGTCTCCAACATAACCAGCAGGGGAATTctggatgggatgggatgggatgtgttcaaaggctacagcaaaagcaattatttttttaggaaccATTGCAGTGGtggttttattttcctttcccGCTCATGGTGCCCATTTTTGGTTTGTAGTTATTTGTTATTTCCTCATCTGAATCCAGCACTGCCATATCAGTGAAATGCTCCATTTGCAGCAGTGGGCATCTAAGCCTGCATGTTACCTCTTCAGTAAGACATTGCTTTTGGTGGTCTGGGGACAACTGATTCATCCTTTGTGTCATCTGATATTCCTTAGTCGTCTGAGAACAGCTCATGCAACCACTTAACTCAATTTTAAAGGTTATACCTGCTATTATTTAAACACCGTTA

Function

symbol description
vdac2 Enables channel activity and identical protein binding activity. Acts upstream of or within calcium import into the mitochondrion; fin regeneration; and regulation of heart contraction. Located in plasma membrane. Is expressed in several structures, including lens; pectoral fin; pericardial region; solid lens vesicle; and ventral mesoderm. Orthologous to human VDAC2 (voltage dependent anion channel 2).

NR:

description
PREDICTED: voltage-dependent anion-selective channel protein 2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0031101 fin regeneration biological_process
GO:0044070 regulation of anion transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
K15040 VDAC2; voltage-dependent anion channel protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684882.1 True 1428 mRNA 0.48 10 23438656 23446125

Neighbor

gene id symbol gene type direction distance location
lrmda cunh10orf11,c3h10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444,LOC105909757 coding downstream 152207 22846282 ~ 23286449 (-)
LOC103042035 zgc:110045,LOC108444131,LOC107582498,LOC107721227,LOC107678543,LOC107708438,LOC108262845,LOC107698144 coding downstream 1043736 22379123 ~ 22394920 (-)
vwc2 vwc2,LOC107589538,LOC107678488,LOC107698155,LOC107721217 coding downstream 1079043 22328143 ~ 22359613 (-)
spata48 NA coding downstream 1141884 22284552 ~ 22296772 (-)
ikzf1 ikzf1,LOC107698154,LOC107721232,LOC107708437,LOC107589539 coding downstream 1163764 22250732 ~ 22274892 (-)
zfand4 zfand4 coding upstream 216573 23662698 ~ 23691895 (-)
washc2c NA coding upstream 247131 23693256 ~ 23708270 (-)
LOC111195939 fam21c,LOC107678570,LOC107589565 coding upstream 263160 23709285 ~ 23714358 (-)
alox5 alox5,alox5a,LOC107747471,LOC107708393,LOC107690200,LOC107582511,LOC107678516 coding upstream 277174 23723299 ~ 23742646 (-)
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding upstream 304009 23750134 ~ 23762804 (-)
G218527 NA non-coding downstream 595442 22843001 ~ 22843214 (-)
G218519 kcnma1 non-coding downstream 620552 22809819 ~ 22818104 (-)
G218448 anxa11,anxa11a,LOC108263209 non-coding downstream 986720 22441756 ~ 22451936 (-)
G218441 NA non-coding downstream 1019283 22416898 ~ 22419373 (-)
G218435 NA non-coding downstream 1030907 22405961 ~ 22407749 (-)
G218602 NA non-coding upstream 13367 23459492 ~ 23467044 (-)
G218698 NA non-coding upstream 312306 23758431 ~ 23760825 (-)
G218703 NA non-coding upstream 337693 23783818 ~ 23784105 (-)
G218697 NA non-coding upstream 339242 23785367 ~ 23786980 (-)
G218709 NA non-coding upstream 369746 23815871 ~ 23816669 (-)
G218545 NA other downstream 592451 22844833 ~ 22846205 (-)
G218329 eif5,LOC107589547 other downstream 1382163 22051889 ~ 22056493 (-)
LOC103022835 NA other downstream 1393544 22038423 ~ 22045112 (-)
G218240 NA other downstream 1583515 21851372 ~ 21855141 (-)
LOC111195999 NA other downstream 1681248 21708787 ~ 21757408 (-)
march8 march8 other upstream 8050 23454175 ~ 23656986 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other upstream 389654 23835779 ~ 23849800 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other upstream 404838 23850963 ~ 23857507 (-)
G218781 NA other upstream 609400 24055525 ~ 24056877 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other upstream 1237112 24683237 ~ 24700649 (-)

Expression


Co-expression Network