LOC103038918 (LOC108441763,LOC108263187)


Basic Information

Item Value
gene id LOC103038918
gene name LOC108441763,LOC108263187
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24328083 ~ 24401465 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684900.1
gggagagatagagagagagagagagagagggagagggagataCGGGGTCTTTCAAGGGGAACTACAGCTCGTCCCTCGGTCTCTGAGCTTTATATCGGATTTTTCTGTGTCCAGAGGAGCGCGGTGCTGAAAACTTGAGCGGATTAGAAGGATGAGGTAGGACTGTCGGGACCTCTGTTGGGACAGAGAACATCAAAGTGCGACCGTGcatgagagtgtgagagagttcCAGTACTTCTGAAGAAAGGGAGGGGTTCAACACCAGGTGTCCACCCCTCCAGGGTGAACTCGACTTGCTTGTTATGATGAGTCCCGATGTGGCGTGGCTGTCCTGCGTACAGCTGCTGTGTGGCATGTTGTCCAGCCTGTGGGCGTATCCCTTCAGACCACCACTGGACCTGGATGTCACTCCTAGGACCACTGTTTTCTCCAAAGggcTGTGGGGGTGCAGGCGCTTCAGTGGATCTACGTTGAACTACAGTACGCTCCTGCTGGAGGAAGAAGCTGGAGTGCTGTATGTTGGAGCCAGAGGGGCTCTGTATGCCCTGCAAGCTGCTAATATCTCCAGCTCCAGTCACACTATCGACTGGGAGGCGCCAGAAGACCAGAAGCAGCTCTGCTTAAACAAAGGGAAAGATAACAAGACAGAGTGTTTCAATCACATCCGCTTCCTGCAGAGATTCAACACCACCCACTTATACACATGCGGGACTCACGCATTCAGCCCACTCTGTGCATATATCGATGATCGGGAGTTTAAGATTTCATCTGTGTTTGAAGAGGGTCGGGAGCGGTGCCCATATGATCCTGCGAAAGGATACACTGGCCTGCTTGTTGATGGGCAAATGTACACAGCATCTCAGTATGAGTTCTGGAGCTCTCCAGACATTCGCCGGAACTCGCCAAACCCCCAGCTGAGGACGGAGGAGGCCCCAACTCGCTGGCTTTACGAAGCTGATTTTGTGGGCTCTGCGCTGGTGAAGGAGAGTGTGAACAGCTCTGTGGGAGACGACGATAAGATCTATTTCTTCTTCACGGAGAAGAGCCAGGAGCACAGCCCGTACTTCAGTCATAGCAGGGTGGCCCGCGTGGCCCGCGTCTGTAAGAGTGACAGAGGAGGTTACCTGACCCTGCAGAAGAAGTGGACGTCCTTCCTGAAGGCCCGGCTGGTGTGTTCTCTGCCTGACTACGAGTTCCACTTTAATGTGTTGCGCAGTGTGTTTATGCTGCAAGGTCTCAAGGTTCAGGACACTGTGCTCTACGGCATCTTTGGGCTGGAGTGGAAAAGCGTGAAAGCTTCTGCCATCTGCCGCTACTCCATCAGCGATATCCAGCAGGCTTTTGACGGACCCTACATGGAGAGTCAGGAGGACGCCACTGCCAAATGGACAGAGTACACCGGGAAGGTGCCTGAGCCACGGCCCGGCTCGTGCATCACAGACCGGCTCAGGTCCAGAGGCATCAATTTCTCCACTGACCTGCCTGATGATGTGCTGCACTTTGTCCGCCGTCACCCTCTTATGGCCAGGCAGGTGCTCCCAGTGGGAGGACGCCCCCTACTGTTTAAGAGGTCCATGGACTACACCAAGATAGCTGTTCACAAAGTGACCGCTCTGGATGGACAGACGTACCACATGTTGTTCATCGGAACAGATGAGGGCTGGCTCCAGAGAGCAGTGGAGGTTAAAGGTCAGCTCCACATCATTGAAGAATTGCAATTGTTTGAGGAGCCGCAGCCTGTGGACAGTATAGTCATCTCTGAGAAACAGATGAGTGTGTACGTGGGTACTCCTTCTACAGTCGTGCAGCTGCCCCTGTCCACGTGTCATAAGTATTCCTCCTGTTTTGACTGTGTGTTAGCACGGGACCCTTTCTGTGCCTGGGATGGAGTGGAATGTGTGGAGATTACCTCACAAACTGACAGATCCAATCTGACTCAAGACATCCTGAATGGGAATGAGGGCTGTGAGAACGCTGCAGCAGATGACCTGGTGCTCCACCGTGCACGCTCAGTGATGGCAGGAGATGATGTGCTGCTGCAGTGCGAGCTCAGCTCCAATCTGGCTGTCCCACAGTGGACACTACATGGACAGGAGCTGCAAGGATACGGGCTCAACTCCGGCTACCGCGTCGGCACCGACGGCCTGCTGGTCATCGAGGCTCGACCGGAGCAAAGCGGCGACTACAGCTGCTTCGCATTGGAGAACGGCATCCGCGTTCCTGTGGTGATCTACACTTTGACTGTGCGTCATGACCTGCCTCCTGTACCACCAGTAGAGGTGACTCGCCCACCTCACATAAGTGGTGCCACCCACCGTACCACTCAAACACACAACAAGAGCAATCAGGACCTGACCCTGCACCCTGCTCCCGCACCGCAGCCTCCACAACTGGAGTTCCTGTCCTTGAGGAACATGGAGGCCATGTACCTTTCTCTTATCACCATTCTTGGCGGACTCTGCCTCGTCTTGACGGTGGTCCTGCTGTATGTCGGGTTCTGTGTGCAGAGCAGAAGGGGGAAATACTCTCTACGGGCTGCAGCTCAGGCTGAGAGGAAGAGAAGCGGCCACATGGAGCTAAAGACCATCTCAAGCCACTGCAATGGCAAAACGGATGCACATGAAGGTCTGCTACAGATCGTACCTGGAGAAGCACAGGCATCTCCAAACAAAGACCTTCCTCCGGCACCCCCGCTGCCCCCACCTCCGCCAAACTCGGAATTTGAATACACCAATGGCCTCTCAGCCACCTTGCCAAGCGTCCTACGCAAAATGAATGGCAACAGTTATGTTTTGCTTAGGCAAAGTGATGGGGACAGCACGTCTCCGCTGTATTATTCCTTCACTGAAGAGCTCAACCGCATCCTGGAGAAGAGGAAACACACTCAGCTGTGTAGCAAACCTGATGAGAGTTCAGTATAAAGAAAGAGAACTTTTttcaacagaaaaacaaaattgCGCCTTCTGTGGTCAGGAGGTTTGATTACAAGTATCTGCAGAAATGTCAAAGGGCAACAGGATGCTAAGTAAAGCATGTATTCCAAGGGTCTTATATTCTTGCCCCATAGCATTTTCAATCCTGGCCTATTGTTGGTCGAAGCAGCCAAGCTCAGCAGCTTTCAATGTTTGTGAAAAGCAGGCACAGAACAAAAGTTGTGACTGACACAATGGATAATCTACCTCGAAAGAACATTTTATGAATTTTGGATGTGTGACATTTTGTCAATAGGTTCTGAGGCTGGTGAGTCCAGAGCAACAGGACTGGatcattgcttttatttttgcagaaaAGTCTGGCTTTGTGGCAAAAGCACTATGTGAAAAACAGCCTCATGGAATATTTCTTCTCTTTGGATGAAAGGACTGCTTCCGGGAGCCTGTACATTtccatataaacattttttctggACGTGGCTGCTTTTGAGCAACACTGCTGAAGGCAGTTCAGTGCCATAaaatgattttgttttgttgtgatGTTGTTATTTATGTCAACACTGACCACACCAGTGACCCATCAAATAACCTGAACTAACAGATACACTGCGCTTATTGTAGCAGTGAATGCTGAAAGGGACTAATTTTGTGAATCAAGCTTTTATAGCTAATGTTTGATAAAATGTGAGGATGACAGTATTAACTACTGGGATGCACTTTAGTAGCAATGAGCATTAACCAGAAACGGTGCTTGTTCTGAAAGAGGTGAGAAAGAGAATGTTATGgatcaaaatagaaaaaaaacaacggACAGATCCGTCCTAACCCTGTCACTGAACCATAAACCACAAgtaattactttaattaatacTAAGACATACTAACCACTATGCTTTCAGTAATGAACCActacatgtttatttttttgccagatACAATTAAAAAAGTTCCCAACCCAGATTTAAAGAAACATAACGGTAAATTATGAATGAATTGAGTACATCAGAAGTTCAGACCCATTCTGCGTGTCTGACTCAGTTTCGTGTTTGTTAACTCAAGGCTTGATTGTTAGATGTTTGTACAGACACAGCATTAAGACTCCCCTCCCCGACCTCACTGAAGCTCCAGAAATGTCTGCTTGCCGGATCGACATGACATCATAGCAGCAGAGGTAAGCTGATGTTGACCTTGTGAGATTATGCCCTTTTTAAACAGGCAATTACACCCACCTCTTACAGCCAGGCACTGGAGGCTTAAGAAGAATCAGAGAATTAGAGCAGCAGTGACAAATTGGGCTCATTCCATCCAGGAATAGTTTGCTAAtggaaagaaataaatactCTTACCGTACAATTTGTTTCTAGAACAATGAGCATTGTTCTGCTTTATTGTTTGAATTGTAGGTTAATTAAATTCATGAGTTCCA

Function

NR:

description
PREDICTED: semaphorin-4G-like

GO: NA

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684900.1 True 4362 mRNA 0.49 16 24328083 24401465

Neighbor

gene id symbol gene type direction distance location
lzts2 lzts2,lzts2a,LOC107733684,LOC107582523,LOC107708464,LOC107690159,LOC107570533 coding downstream 72944 24137822 ~ 24255139 (-)
LOC103040609 LOC103040609,LOC108441766,LOC108263463,LOC107678536,LOC107708462,LOC107570532,LOC106577244 coding downstream 236574 24079867 ~ 24091509 (-)
LOC103041217 mat1a,LOC107582520,LOC107678534,LOC107733750,LOC107708460,LOC108263526,LOC105911600,LOC107570529 coding downstream 287715 24030874 ~ 24040368 (-)
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding downstream 565279 23750134 ~ 23762804 (-)
alox5 alox5,alox5a,LOC107747471,LOC107708393,LOC107690200,LOC107582511,LOC107678516 coding downstream 585437 23723299 ~ 23742646 (-)
LOC103039233 NA coding upstream 4442 24405907 ~ 24428299 (-)
dcaf10 dcaf10,wdr32,LOC107708468,LOC107678556,LOC107733687 coding upstream 46348 24447813 ~ 24457455 (-)
pomk pomk coding upstream 57866 24459331 ~ 24462707 (-)
LOC103040598 zgc:123321,LOC108441758,LOC107690194,LOC107733692,LOC107582562,LOC107708471 coding upstream 65715 24467180 ~ 24472883 (-)
LOC103041609 LOC105419135 coding upstream 73489 24474954 ~ 24495039 (-)
G218829 NA non-coding downstream 157309 24167395 ~ 24170774 (-)
G218820 NA non-coding downstream 191088 24134185 ~ 24136995 (-)
G218793 NA non-coding downstream 254949 24070915 ~ 24073134 (-)
LOC111195998 NA non-coding downstream 272961 24054267 ~ 24055122 (-)
G218779 zgc:154058,LOC103041715,LOC107582519,LOC107570530,LOC107708463,LOC107733751,LOC107678495,LOC108441772 non-coding downstream 302194 24022837 ~ 24025889 (-)
G218927 NA non-coding upstream 98208 24499673 ~ 24507296 (-)
G218929 NA non-coding upstream 108180 24509645 ~ 24509912 (-)
G218930 LOC103042321,LOC108441753 non-coding upstream 109909 24511374 ~ 24583080 (-)
G218938 htra2,LOC108441752,LOC103144266,LOC106918274,LOC105899646,LOC106963707 non-coding upstream 124799 24526264 ~ 24527579 (-)
G218986 LOC108263817 non-coding upstream 253427 24654892 ~ 24657410 (-)
G218781 NA other downstream 271206 24055525 ~ 24056877 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other downstream 470576 23850963 ~ 23857507 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other downstream 478283 23835779 ~ 23849800 (-)
march8 march8 other downstream 671097 23454175 ~ 23656986 (-)
G218545 NA other downstream 1481878 22844833 ~ 22846205 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other upstream 281772 24683237 ~ 24700649 (-)
LOC103046115 lrit3 other upstream 816684 25218149 ~ 25226250 (-)
G219510 NA other upstream 2071163 26472628 ~ 26474247 (-)
zbtb18 zbtb18,LOC107666464,LOC107587843 other upstream 2337339 26738804 ~ 26757592 (-)
G219671 NA other upstream 2425563 26827028 ~ 26827527 (-)

Expression


Co-expression Network