rrh (rrh,LOC107666394,LOC107585226,LOC107733708)


Basic Information

Item Value
gene id rrh
gene name rrh,LOC107666394,LOC107585226,LOC107733708
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25184634 ~ 25192379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684918.1
GCAAAATGTATTTGAATGTGTTACAGAGGCCTTTCTAGCAGTCAGctatctctcaccaagaggtacattACCCAAATGTAGCCACTGAGAACCTTTTTATAGGGCATGGAAGAAAGCAATTTTACACCCTCTTGTCGCAGGGCTCTTTATAGGCTATACATTATTAACAAAGGCACAGAAAGTTTTACTGGATGTGAGCTCTTTAAGACTAATCTGCAACATTTTCTCACACTATTAAAACCACCACGTCTGTGAAAGACTTGAAAATTTGGTTTAGAGAGTTTAGACTTGTGGTATACTGTTTTGTGTAGCTCTATAGCTGTCAATATTGTTTTGTGGTGGTGTTGTTTGTGATATTCACAGCTATATAGACTATACAGTTTTCTCCATTCAGGCTGGAATCTTgttgttcactctctctctgcagatCTGATGTTTTAAGAATGAAAAGCCTTCATGCGAGGATTATGCCTGAAACAATGAGCTCCTTAGTGTTCACAAACCAGGCAAAGCCTAATCCTCCCCTCAACTTCACCTAGCTGACCACAGTCACTCCACCAATATTAACAATGCATAAACCCCAAAACCTCTGCCTACTTAACATGCCCcccatgttctctctctctctctgtctctctctctctctctctctctctctctctctcatatacaCAGAGTTTCCTAAACTCTCTCTTTTTGCAAATGCAGGAGGAAGGGCTGTGCACGGGATAGGCTGCTCTACGCcgctgtgtgctgtgtgttttaGGCCGGACTCTAGTGAATGTCAGAGGGACACAGAGCTTGTTTTGTGTGGATATGTGTGAGAAAGAAATGGGGCATGAAATGCTAAACTCATCGTCTGAAGCTGTTAACTATGGTGGAAAAAGTGCCTTCTCGCAAACGGAGCACAACATCGTCGCTGGATACCTCATTACTGCATGTGTGATCAGTTTGTCCAGTAACATTGTTGTGCTCATAATGTTCGTAAAGTTCAAAGAATTGCGTAATGCCACAAACGCTATCATCATTAACCTGGCCTTTACTGATGTTGGAGTGGCGGGCATCGGTTACCCTATGTCTGCTGCCTCTGACCTGTATGGCAGCTGGAAATTCGGTCACACTGGTTGCCAGATCTATGCTGCACTGAATATATTCTTTGGGATGGCCAGTATAGGCCTGCTGACAGTGGTTGCTATTGACAGATACATCAGCATCTGCAGACCTGATATAGGGCAGAAAATGACCACATGCTCATATACAATCTTAATTGTGGCTGCATGGCTGAACGCAGTGTTTTGGTCGTCCATGCCGATCGTGGGCTGGGCTGGGTACGCACCTGATCCAACCGGAGCTACCTGCACCATCAACTGGAGGAACAACGATGCGTCCTTTATCTCCTACACCATGGCAGTAATTTTTGTTAACTTTATTGTGCCACTGTCTGTGATGTTCTACTGCTACTACAATGTTTCAGTCACCATTAAAAGGTACAAGGCCAGCAACTGTCTGGAGAGCATCAACATAGACTGGTCAGACCAGATGGATGTAACTAAGATGTCTGTTGTAATGATCGTGATGTTCTTGGTGGCCTGGTCTCCTTACTCCATAGTGTGTCTTTGGGCATCGTTTAGCGATCCCAAAATGATTCCTGCACCAATGGCCATCATCGCCCCTCTCTTCGCAAAGTCATCCACTTTCTACAATCCCTGCATCTACGTTATCGCCAACAAGAAATTCAGAAGAGCCATCATAGGAATGCTACGATGCCAGACCCGTCAGCGAATCACCATCAGCAACCAGGTTCCCATGACGGCTTCTCAGCTGCCTCTCAACCAATAGATGATGACCTCTGAAGCTCTCTGCTCAGCGCTGGACGCTGTTCCCCATCTTCCTTCTTCACCACAATGTTGCCATAGTTTTCCcacttaaatattaaacagtccAACATTTTA

Function

symbol description
rrh Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gut; heart; and integument. Orthologous to human RRH (retinal pigment epithelium-derived rhodopsin homolog).

NR:

description
visual pigment-like receptor peropsin

GO: NA

KEGG:

id description
K04253 RRH; visual pigment-like receptor peropsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684918.1 True 1952 mRNA 0.45 7 25184634 25192379

Neighbor

gene id symbol gene type direction distance location
ap5s1 ap5s1 coding upstream 386035 24794890 ~ 24798599 (+)
cdc25b cdc25b,LOC108417292 coding upstream 397294 24779609 ~ 24787340 (+)
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding upstream 506521 24658431 ~ 24678113 (+)
LOC103044475 rab11fip5,LOC108263817 coding upstream 526986 24598605 ~ 24657648 (+)
LOC103046402 NA coding upstream 587119 24591088 ~ 24597515 (+)
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding downstream 34062 25226441 ~ 25241001 (+)
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding downstream 118464 25310843 ~ 25315607 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding downstream 148085 25340464 ~ 25406863 (+)
c25h9orf72 cunh9orf72,zgc:100846,c3h9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028 coding downstream 225001 25417380 ~ 25430559 (+)
LOC103041526 NA coding downstream 238867 25431246 ~ 25437272 (+)
G219141 NA non-coding upstream 45687 25133953 ~ 25138947 (+)
G219102 NA non-coding upstream 99778 25084457 ~ 25084856 (+)
G219074 NA non-coding upstream 142845 25041237 ~ 25041789 (+)
G219069 NA non-coding upstream 175105 25009141 ~ 25009529 (+)
G219067 NA non-coding upstream 237563 24946724 ~ 24947071 (+)
G219150 NA non-coding downstream 529 25192908 ~ 25194235 (+)
G219151 enpep non-coding downstream 2408 25194787 ~ 25198276 (+)
G219153 NA non-coding downstream 11655 25204034 ~ 25208010 (+)
G219154 NA non-coding downstream 17156 25209535 ~ 25215808 (+)
G219155 NA non-coding downstream 25340 25217719 ~ 25218017 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 9926 25161727 ~ 25174708 (+)
G219050 NA other upstream 342101 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 717767 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 1113008 24064495 ~ 24071626 (+)
G218758 NA other upstream 1120846 24059211 ~ 24063788 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 64571 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 246340 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2008073 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 3298467 28490846 ~ 28551769 (+)
G220074 NA other downstream 3526877 28719256 ~ 28720661 (+)

Expression


Co-expression Network