atrn (atrn)


Basic Information

Item Value
gene id atrn
gene name atrn
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26335600 ~ 26469671 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684934.1
CTCGTCATATCCGCTGTGTGTCACTGCGGCGATACTGATCTGTAGATGTAAATGGAGGAGAGGGAAGATAACAGCGGGACAGAGAGCTCAGTCCGGCCGCCAGCGACTCCTCACGCACCGCGCTTCCTCCTCCAGCCGGTCCTTCACTAGCTCTctcagcggcagcagcagcggctcAGCGGCTTCGACACTCTCCCAGTCAGCAGCCATTTTCGCGCGGATGGCCGGTCAGGTTTGGAGGGCCGctggccggagccgcgggcctCAGCTGCGGACGCTGCTGGTGCTGTCGGCGCTCGGGGGACTGGTGTGTATGGTCGCCGCTGCGGAGGCGAAGGACTGCGACAGGACCTGCGTGAACGGCCGCTGCAACCCGGCCAACGGGAACTGCCTGTGTGATCCGGGCTGGGTAGGGGATCAGTGCCAGCACTGCGGCGGCCGCTTCAGGCTAACTGGACCTTCTGGATATCTGTCAGATGGACCCGGAAACTACAAATACAAGACCAAGTGCACCTGGCTTATAGAGGGACAGACTAACTCTATTCTGAGGCTGCGCTTCGAGCATTTCGCCACAGAGTGCAGCTGGGACCACCTGTATGTGTACGATGGAGACTCCATCTACTCTCCTCTACTGGCTGCTTTCAGTGGGCTGATAGTTCCAGAGCACTACAGCAATGAAACGGTTCCAGAGGTGGTGTCTGAATCGGGTTATGCACTCCTGCACTTTTTCAGTGATGCAGCTTACAACCTTACTGGCTTCAACATCTCATACAGGATAAATACGTGTCCCAATAACTGCTCAGGTCGTGGTGTGTGTCGGCTGGCTAACTCCAGTGAGACGGTgaggtgtgagtgtgaagaGGGCTGGAAGGGAGAGGCGTGTGACGTTCCTTACTGTGCCTCGAATTGCGGTTACCCTGCGCAGGGTCATTGCCAAACCAGCACCAAACGCTGCCGCTGCAAACCCGGCTGGCAAGgtcCTGATTGTTCAGTGTCAGTGCCAGCTAATGTGTCTTTTTGGACACACGAGGAGTTCAGTGGGTATGGTCTGGCACGAGCATCTCATAAAGCTGTGGTGCTGGGGGACGTCATGTGGGTGATCGGTGGACACGTGTTCAACTACTCCAATTACCAGATGGTGACAGCgtTTAACCTCACCTCTCAGACCTGGATATCTCTGAACCGTTCCATCAACTACGTCCCTGCACGCTATGGTCACTCACTGGCTGTgcatgagGATAAGATTTACATGTATGGAGGAAAGATTGACTCCACAGGAAACGTGACCTCGGAGCTGTGGGTGTTCCACACGCGGAATCAGTCGTGGGAGCTGCTGAGCCCTCAGGCTAAAGAGCAGTACGCTGTGGTGGGTCACTCTGCTCACACAGTTCAGCTCCAGCCTGACGGATCAGAGccggtcatgctggtcatcttCGGACACTGCCCTCTGTATGGATACATCAGCCAAGTGCAGCAGTACAACATCGTAAAGAACACGTGGAGCGTTCAGGAGACGAAGGGTGCGCTGGTTCATGGGGGTTATGGTCACAGCAGTGTGTATGACCCTCTCACCCGCTTTGTCTACATTCACGGAGGCTACAAAGCTTTCAACTCCACAAAGTACGGCCTGGCCACGGACCTGTACCGCTACGACGTGGACAGGAGCATGTGGTCGATCCTGAAAGACAGCGGCTCATTCCGCTACCTCCACACAGCTGTGCTGGTGGGTGGAAGCTTGCTGGTCTTTGGAGGAAACACCCACAATGACACGTCCATGAGTCTCGGCGCCAAGTGCTTCTCTTCGGACTTCATGGCGTATAGTCTGGCATGTGATGAGTGGACCGTGCTGCCCAGACCTAATCTTCACCACGATCTAAACCGCTTTGGCCATTCTGCTGTCTACAGCAATGGggTGATGTATGTGTATGGGGGCTTTAACAGTCTGATGCTGAGTGATATGTTGAAGTTCACACCTGCCAGTTGCGCTGCCTTCTCTGAGGAGTCGGCGTGTGTGACGGCTGTGCCGGGTGTACGCTGTATATGGAATTTCACCACCAGTACCTGTCTCTCCTGGTTGGACACCAAATCCCTGGAGCCTGAGACCCTGCTCAGGATGTGCACTCCCAGAGTCTatgcAGACAGTGATAAATGTCAGTACCAGTACACAGACTGCTACAGCTGCACAGCGAACACTAACGGCTGCCAGTGGTGCTCCGAGCGCTGCGTGTCCATCCTCCACAACTGCACGGCTTCCTCGGGCTCAGTAACTGAGTTTGAGGCGTGTCCTAAGGATGTCCACTCGTACGTATGCAGTAAGAAGACCAGCTGTAAGAGCTGTGCTACTGACCAGAACTGCCAGTGGGAGTCCAGAAACCAGGAGTGCATTGCTTTACCTGagaatATCTGTGGAGAGAGCTGGCACCTGGTGGGGAATTCGTGTCTGAAGCTGATAACAGCAAAGGATTCCTATGACAATGCTAAACTGGCCTGCCGCAGTCACAATGCTGTGCTCGCCTCGCTCACCACTCAGAAGAAGGTTCAGTTCGTCCTCAAAGAGCTGCAGAACAGAGCTGCACAGtcCAAGTCAGTGGTGACTCCGTGGGTCGGCTTGAGGAAGGTGAATGTGTCGTACTGGTGCTGGGAGGACATGTCCCCCTTCACCAACACCACTCTGCAGTGGTTACCAGGGGAACCCAGTGACGCTGGATTTTGTGGATACCTGGCTGAGCCCAGCGCCGGTGGGCTGAAGGCTGCAGCCTGCATCAACTCCTTCAACGGCAGCCTGTGTGAACGATCAGCCAATCACAGTGTGAAGCAGTGTCGCACGCCATGTGCCCTGCGCTCCTCCTGCAGCGAGTGTACGAGTGGGGGCTCAGAGTGTATGTGGTGCAGTAACATGCGGCAGTGTGTCGACTCCAATGCCTACGTCGCCTCCTTCCCTTTTGGCCAGTGCATGGAGTGGTACACCATGAACAGCTGCCCACCGGAGAACTGCTCTGGTTATAGGACGTGTTCACAGTGCCTGGATCAGCCTGGCTGCGGGTGGTGTACCGACCCCAGCAATACGGGAAAGGGTCAGTGTATGGAGGGCTCGTACCGCGGACCAATCCAGACCGTCTTACACGCTCCCTCATCCTCGAGACCCTCTTTCATACCGGCCCCTCAGCCCCTGCTGAATGTTAGCCTGTGCCCACAGGATAACAAGTACAACTGGTCCTTCATCCAGTGCCCAGCGTGTCAGTGTAATGGCCACAGCGCATGTGTGAACGAGAGCGTCTGCGAGAGATGTGAAGATCTCACCACTGGCAGACACTGCGAGAACTGCATATCTGGTTACTATGGTGACCCCACAAACGGGGGCAGCTGTCAGCCCTGTAAGTGTAACGGTCACGCCAGCATGTGCAACTCAAACAACGGCAAGTGCTTCTGCACCACCAAGGGCATCAAAGGAGACCGCTGCAATCTgtgtGAAGTAGAGAATCGTTACCAGGGCAACCCTCTGAGAGGAACCTGTTATTacacactgctgATAGACTATCAGTTCACCTTCAGTCTGTCCCAGGAGGATGACCGCTACTACACCGCCATCAACTTTGTAGCCACGCCAGACGAGCAAAATCGAGACCTGGACATGATCATTAACGCCTCCAAGAACTTTAACCTCAACATCACCTGGGCCACCAGCTTTGCTGCCGGGACTCAGTCTGGAGAAGAGATTCCAATTGTGTCCTGCAGCAACATAAAAGAGTTTAAGGACAGTTTCTCCAATGAGAAGTTTGACTTCCGCAGCAACGTCAACATCACCTTCTTCGTTTATGTCAGCAACTTCACCTGGCCAATTAAAATACAGATTGCGTTCTCCCAGCACAGTAACTTCATGGATCTAGTACAGTTCTTTGTCACATTTTTCAGTTGTTTCCTGTCTCTTCTTCTGGTGGCGGCAGTGGTGTGGAAGATCAAGCAGAGCTGTTGGGCGTCACGGCGGCGAGAGCAACTCCTGCGAGAGATGCAGCAGATGGCCAGTCGGCCGTTTGCCACAATCAACGTTGCCTTGGAGACGGACGAGGAGCCGCCCGATCTGATTGGTGGAAATGTGAAGGCGGTGCCAAAGCCCATAGCGCTGGAGCCGTGTTTTGGGAATAAGGCAGCAGTGCTGTCCATCTTCATCAGATTACCCAGAGGCCCCGGAGGCATACCAACTCCCGGACAGTCAGgtctgGCGGTGGCGAGTGCGCTGGTGGACGTGTCTCAGCAGCTGTGCGTGGGCTATAAGGAGAAATCGGGAGGGCTGCGCAGCCGCAAGCAGCAGCCGTTAGCACAGCCAGCTACGTGCATCTGACCCTTACCCCCCTGCAGCCCCAGCCCCTGAGCTCTGACCTCCGCCTGGACTGAGCCACGGACCACCGCAACACACACGGCGGGGGTCACACACTCTCTGGCGGACCAAGGGTCTGGCTTTCCACAAGAACTCTATGATTGACTGGAGGAACTGAGAGAAACTCTCCCGGCCATTGGAATGtactcaaaacaaaaaagagagagagagagagagaagaatggACACAATGGGAGAGAATTGAAATGCTGAACCCTCTCCTCCGTCCTCTTGAcggactgacagacagacagactgcagATAGAACTTCTCTCCTGCATCCGTTATATGATATTTAACTTATTGCTGTTGTTTTAGTCCCGTTTTACACTCAGGAGGAGGTACCCCTGCACTGCTGCAACATGGTCTCCACACAGCCAGACCACCCATTGCTATAACACACACattgctctcacacacacacacgcacacacacacacatgccaacTCATGTACCCTCATTTGCACATTTCGCATCTGTCTCCCCTAAATCATGGCTCTGATTGCAGTTCTTTTGCAAAGCTCTGTCTTAATCATCTTCCTCTCTTGAGAACAGTAGGTCTTAAACCTGGAATTTGAAaatactacagctctggaaaaaaataataagaaaccacttaaaattatgagtttctttgattttaccaacttgaaaacctctggaatataatcaagagaaagatggatgatctcaagccatcaaaccaaactgaactgcttgatgcttttttgcaccaggagtggcataaagttatccaaaatcagtgtgtaagactggtggaggagaacatgccaagtcgcttaatttttttcagaggtgTATATGGTAAATGCACTATATGAAAAAAACAacgtattgggacacctgcacaTTAATTGTTTTCCCgaaatcaagtttttttttttttcctgcttttgttcCAGTAACAACTCTCACTGCTGTCCAGAGAAGCCTACTAGCTACTAGATTTAGCTGATGCAGAGCATTGCTGTATAGATTTATTAGCATTCAGTTAGCAACAAAGGTATTAATTAGTAAGGTtgggatgttggatgatcacaaccttgctatttcagcccaaaagtactgggagagagaacacagttctacttACTGTTCCACAACTCAAAGCAGGGGCAGCTTTAGTTTCTACCCTTCGTTGTTGAGCATTGTGCTAACAAcgtcatgtttatctgctccagagtgtcctattcttttggcagtacATCTCTACAGGAAGTAGACAAGCTCTATGTGTGTGCATCAGTCGCTATGGGAGGAACTTTTAAAGTAGttaaaggggtgtccacaaacatttggacattgtcacatcaatacaatacaaagcacagtataaaaaatggacttttgttagAAACCATCCTTTTAACAAGTGTTGCCTTCTAATTTGTCATTTGGCTTTTTATGATCTTGTCATATATCAAAAATCCTCCACAGCACTTTACGATGAGTGGTCCTGCgcttcttttttaaaataaggatCCATTTTTGATGTTCGTTTCAAACATTTACAAGTAATCTACTTTTAGCCTGATGAGATACACGACACTTTTCACCCGTCACATTCTACCTAAGACCTGAATCAACGGAATCAAGTGTGATTTAGTTGGAATTTGTTAACGTTTTCTCCACAAGAGCTAATGTGTCAGTAGGTGACAGCTTCTGTCTAGAACTGTGAACAGTTCTTCACAGCCTGTAGTGATGGCTGGAGTATTAAAATATTCATTGGTGTCAGTGCTGGTAACAGAAAGAATTCTGGGAACAGACAGCAGTGGGGAAAAATGGTAGATGGTTCGGGGATAAATATGAGGATAATAAGGATATGTGAATTATGGCCAAgtgaattatgaattattgcAGTTAGAGAGATGTCTGATATTGGGTGCCAGATAGTGCTAGTTTCACACTTTACGATTTTAaccaacagttttttgttgATCGCCGCCAAAAACTCTGCTCGAAGGCAAATTGCGGATTACTCGGCGCTCGCTCAGTTCTgtagtgtgaactactgaaagacGTTCGCCGAGCCTTCGCTAACTAATCGCAGATGCCTTGCAAATATTTGctatgctagatatctgacccaaTCGACGActaggagtcaggagcagcagcTACATAACTACTAATGGAATTGCAGAGAGAGA

Function

symbol description
atrn Acts upstream of or within regulation of actomyosin structure organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basement membrane and plasma membrane. Is expressed in blastomere; forebrain; midbrain; and otic vesicle. Orthologous to human ATRN (attractin).

NR:

description
PREDICTED: attractin

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K24332 ATRN; attractin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684934.1 True 6547 mRNA 0.51 29 26335600 26469671

Neighbor

gene id symbol gene type direction distance location
eif2ak3 eif2ak3,LOC107683275 coding upstream 3900 26285777 ~ 26331700 (+)
LOC103042087 rpia,LOC107671341,LOC107695020 coding upstream 51485 26273839 ~ 26284115 (+)
slc4a11 slc4a11,LOC107747581 coding upstream 65905 26143357 ~ 26269695 (+)
c25h20orf194 cunh20orf194,c3h20orf194 coding upstream 209988 26089983 ~ 26125612 (+)
LOC103044529 LOC103044529 coding upstream 249450 26080829 ~ 26086150 (+)
adss adss,LOC107585249,LOC107666526,LOC107698758,LOC107733748 coding downstream 222482 26692153 ~ 26720305 (+)
LOC103024575 akt3,akt3a,LOC103024575,LOC108422057,LOC107666430,LOC106589689 coding downstream 357677 26827348 ~ 26977774 (+)
cep170 cep170 coding downstream 624427 27094098 ~ 27181917 (+)
abcg8 abcg8,LOC107666472 coding downstream 812929 27282600 ~ 27293085 (+)
ppm1b ppm1b,ppm1ba,LOC107747533,LOC107666482,LOC107733761,LOC107585253 coding downstream 963191 27432862 ~ 27467984 (+)
G219404 NA non-coding upstream 130728 26202229 ~ 26204872 (+)
G219374 NA non-coding upstream 388256 25947009 ~ 25947344 (+)
G219367 NA non-coding upstream 434731 25900643 ~ 25900869 (+)
G219286 NA non-coding upstream 528581 25747231 ~ 25807019 (+)
G219282 NA non-coding upstream 643083 25632476 ~ 25692517 (+)
G219432 NA non-coding downstream 193750 26663421 ~ 26663641 (+)
G219433 desi2,LOC107587845,LOC107747542,LOC107733777,LOC107666556,LOC107089908 non-coding downstream 198380 26668051 ~ 26684245 (+)
LOC111196015 NA non-coding downstream 326572 26796243 ~ 26799752 (+)
G219567 NA non-coding downstream 328926 26798597 ~ 26798846 (+)
G219571 NA non-coding downstream 335477 26805148 ~ 26805498 (+)
LOC103047652 NA other upstream 893019 25438719 ~ 25442581 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 1033013 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 1160892 25161727 ~ 25174708 (+)
G219050 NA other upstream 1493067 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 1868733 24443291 ~ 24466867 (+)
LOC111196018 NA other downstream 730781 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 2021175 28490846 ~ 28551769 (+)
G220074 NA other downstream 2249585 28719256 ~ 28720661 (+)
G220194 NA other downstream 2671696 29141367 ~ 29142018 (+)
LOC103047316 NA other downstream 3166390 29636061 ~ 29640401 (+)

Expression


Co-expression Network