LOC111196020 (LOC105007542)


Basic Information

Item Value
gene id LOC111196020
gene name LOC105007542
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23965642 ~ 23969331 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684957.1
tattcattttgtaaaaataaactgactGTTTACcaattaaaagcttaaaattgCTCGCTTAGTAAGCGGTGGTAATCGACCATGATAGCATTAGCTAACTAGATATCTGTGTTTGTTAGGCTAAAAGACAGACTGCCTTTCTCTGTACATTTTATCTAAACATTATCTAACTTGCAGCTTTCTGTGTATCATACAGTTATCTAGGATGAAAACTAGTAGAAAATAGTGGAAAATGTACCATCAGTCAATGTGTCTACTTCTTTAAACAACTGAAAATGAAATCCCACCTAACTGTAATTACGGATTAATGAATACACTGAGCATTAAGTATGTATTAGAGATAAGTGAAGCttcatcacttcctgttacAACATAACgagttaatatgttaatatttacaGTTATAATCTGCATTgttcatatatttataacaaAGTACACAAATGGGACACAGCTTAGAATAACCCCCACTGAAATTAAAACCTTGATGCTTTACAGTGCTACAATATGTACTGTATGCAGATTcaacagtaatatttttttctttatagagAAGCTGTGAACACAACAGACATTTGTTatgaaacagtaaacagtattatTTCAGTTCCTATATTACACCCCATATTCATTATGAAATCAGTTCCCTTTTCTATACAATAGTGGTTCTCCTGGGGTCAgtctcacactcactcagagGTTACTGTTGAGATATTGCTCCTGTAATATGACTGCCTATTGTAAGATTGGAGGATTATTCATCTACCTACTTTTCTTTCTTGTACAACATGGACGCGAGAGGAGTGCACACAGGTAAATCTGTTACAGtgtataatgtgtttaatagtactattaaataattcttaaaatagGTTTTATTAAATGCACGCAGAAAACTAAattcaaatgtaaataaacttaaatacatattaaacatttcattttttttttttgtaaataaaagtatttccaTTAAAACGACCTACAGGTATGTAAGTAAATTTAAGATCAGCTCAGAGATATGAGAATCTCTGGTGTAGTAGCATATCCTATTAAACATTTCAGTGGCAGTAAGACCTGTGTGTATGTGCTAAAAATGATTCTCAGCAAACAATCAACAATAATGTTAAGTATTTTTGATTAATGCAGATTAAAAAGCATGGACAATATTCATGTGAGGGACGGAATCTCACCTACATACCTACCAGTTTACCTTCCTCTGTGAAAATTCTGGACTTCAGTTTAAATTTTTTACCCACTTTGAAGAGGTCTGTATTCCCTCAGCTGTATAATCTGCAACATCTTGATCTTACCAGATGTCATATTCATCATATTGCTGATGATGCTTTCCTCAATATGAAGAACCTCACCACTCTAATTCTCACTGGAAACCCTGTCTCATATTTCGGACCTGATAGCCTTAATGTGCTACATAAATTACACAGATTAGTTTTGGTGGACACTGGCCTGTACTCTTTAAATGTCCGATTTAACAATCTCACCAAGCTTCACGAACTAAACATTGGAACTAACAACATTCAGTCCATGGCTCTTCCACCGTTCATGATACACTTTGAAGACTTTAACTTACTGGATCTGCATGCTAATAACATTTCTATCTTAAAAGTAAATGACACAAATATTCTTCAGCAGATGAAAGGAAATCTCACATTGATTCTCTCAAGGAACCCGATATTACACATAGAACCAGGAGCGTTTCAAAACATGTACCTCAGAGAGCTTAACATTCGCAACGCCTTTGCTTCACTTGATGCCCAAAGGGATGGTCTAAAAGCCCTCAGTGGTCTTAATGTTGGCAAACTTGTAATTGGAAGCTACAGACTGGATTACAGGTCAAAAACATCTGATGGTGATCTTAACGGCCTCTGCCTGATTAATTTTGAAGAAATTGATTCTCTCCATGCTGGTTGGTCAGCGTCTGAATTACAGTGTATTGTCAATGCAACAAAAATCTCTATTGAAAGAGGAAATGTCAGAGCAATAGAAAATGTTCCATTTCAGCGAGTTAAAGAACTCCGCATTGTTGCCAATTACATACCTGTATCACTGGAACTTTCAAATCTGGAAACATTGGAAACATTAGTGGCAATTCAGACTCCATATATACTTATTAGAGGAATCAGTGACATGCCCAGGCTCCAGCATATAGATCTAAGTAACTGTAAACTAGACACTCCTAGCATTTTTAGAGGGCTCCCAAACATTCACAGCCTTAACCTGAGTAACAGTGGAAGTAAGTACATaagtaaaaacatgtttaatggaCTTTCTTCATTAGAAGTTTTGGACTTTCACCTAACAACATTGGGAGGATTAACTGCAGATTTTGAACCCTTTAAAAAGCTCCGGaatttaaaatttctggatATTTCTTAtacagaaattattttttggaGTGCCATAAGCTTTGGTAGCTTAAACAGgttaaaagtactaaaaatgGCAGGCAGCCGTTTTCAAGGAGATGCGCTGAGTTACTTATTTGAAAATCTCACATCAGTGGAATACATAGACATCTCAAACTGTAAAATTGACAGCATAGCCTGGAGAACATTTAAAGGGCTTCCAAGATTGCAGCAGTTACTGCTTAATCAGAACAGATTGATGGTTTTGGATTTTGTTACCCATCCAAATTTAAAAGACTTGAGTTTATTAGAAGTTCACACAAATAATATTGCTAGCATCCCTCTTAATATCCTACAAAATCTACCAAAAAATCTCACTGTTCTTGATTTGTCCTTTAATCCTATCGATTGTTCCTGTTCTCAAATAAATTTTATCTTATGGATCACTAGCCATCAGCAAATCTTCCCccagaaaaataacattttatgtaAATCACAATCACTGGAATCAAGGCATAAAACTATTGACTTTGACGTTGAAAGCTGCGAACACATCAGAAGACTTACTATTGTTACGTCTATATGTGCTGTGGTTCTATTGGTTCTTGCTTCAGTTTTGGCCTACAGGTTCCAGTTTTACCTGCGTTATGGATATATTCTCCTTAAAGGTTATAGGACCTCCAGACAGCAAGAATGGTCCTATGATGCGTTCGTGATTTATTCCAGTAAAGATGAATGCTGGGTAATGGATGAACTGGTGGAAAACTTGGAAAATGGAATTCCACCCATACATCTTTGCCTCCATGTGCGAGACTTTGAAGCAGGCAAGGCCATCACCTCCAACATTATAGACGAGGGCATTATGGGCAGTCGTAAAATTATAGTGGTCGTATCTAAACACTTCACTGACAGCTCTTGGTGTAGATTTGAGTTTGAAGTGGCCCAGTCCTGGCTAGTGACACAAGGCAATcccaacatcatcatcatcattttggAGGACGTTGAAGAAGAGAAGACAAAGAAAGTATTTGGGCTTCACAAACACCTGAAAAAGAACACGTATCTGAAGTGGAGCTCAAATCCCATAAATAACATGAGATTCTGGATTCGTCTCAGAAAAGCTGttataacataaaaaagtttGTCTTTTACTTCCCTGTTTACATTtatcagtgtttcttacatttttctgtattaaaatattgtgtaaATCATTAT

Function

NR:

description
PREDICTED: toll-like receptor 4 isoform X3

GO:

id name namespace
GO:0002224 toll-like receptor signaling pathway biological_process

KEGG:

id description
K18809 TL; protein toll

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684957.1 True 3584 mRNA 0.36 2 23965642 23969331

Neighbor

gene id symbol gene type direction distance location
LOC111195965 LOC105007542 coding upstream 3541 23959074 ~ 23962101 (+)
LOC111196037 LOC105007542 coding upstream 11837 23950856 ~ 23953805 (+)
LOC111195940 LOC108263518,LOC108444380,LOC108442180 coding upstream 32030 23932621 ~ 23933612 (+)
LOC103039990 LOC105007542 coding upstream 33071 23929762 ~ 23932571 (+)
LOC103030417 si:ch211-198a12.6,LOC103030417,LOC108444387,LOC108263519,LOC107747450,LOC107589522,LOC107690167,LOC107678580 coding upstream 39529 23920183 ~ 23926113 (+)
LOC103042015 LOC108441770 coding downstream 1359 23970690 ~ 23977592 (+)
pdzd7 pdzd7,LOC107690160,LOC107678494 coding downstream 122846 24092177 ~ 24130745 (+)
LOC103045799 cpxm1,cpxm1a,LOC107678553,LOC107708467 coding downstream 460341 24429672 ~ 24446638 (+)
LOC103040903 NA coding downstream 526322 24495653 ~ 24507303 (+)
LOC103042321 LOC103042321,LOC108441753 coding downstream 542010 24511341 ~ 24515822 (+)
G218743 NA non-coding upstream 19830 23945558 ~ 23945812 (+)
G218742 NA non-coding upstream 27368 23938070 ~ 23938274 (+)
G218688 NA non-coding upstream 185138 23780213 ~ 23780504 (+)
G218681 NA non-coding upstream 202205 23763218 ~ 23763437 (+)
G218680 NA non-coding upstream 202882 23762247 ~ 23762760 (+)
G218754 NA non-coding downstream 42544 24011875 ~ 24019458 (+)
G218795 sfxn3,LOC103040609,LOC108263463,LOC108441766,LOC107708462,LOC107678536,LOC105911632 non-coding downstream 113608 24082939 ~ 24091553 (+)
G218799 NA non-coding downstream 164845 24134176 ~ 24137086 (+)
G218836 NA non-coding downstream 312374 24281705 ~ 24282056 (+)
G218841 NA non-coding downstream 348311 24317642 ~ 24318194 (+)
G218651 NA other upstream 257399 23696577 ~ 23708243 (+)
kcnma1 kcnma1,LOC108263740 other upstream 1147528 22563798 ~ 22818114 (+)
G218351 NA other upstream 1746782 22217299 ~ 22218860 (+)
mark3 mark3 other upstream 1867383 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 3549999 20335947 ~ 20415643 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 11804 23981135 ~ 24028981 (+)
G218758 NA other downstream 89880 24059211 ~ 24063788 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other downstream 95164 24064495 ~ 24071626 (+)
LOC103046104 LOC108441759 other downstream 473960 24443291 ~ 24466867 (+)
G219050 NA other downstream 872971 24842302 ~ 24842533 (+)

Expression


Co-expression Network