LOC103045503 (sfxn5,sfxn5a,LOC108262907)


Basic Information

Item Value
gene id LOC103045503
gene name sfxn5,sfxn5a,LOC108262907
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24658431 ~ 24678113 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684969.1
AAGGCATGTGCGACAGAAGCTGAAGTAAACTTCGGGTTTTATTACAGTATCATTGTAAATATTAACGTGTTCATTGTGTGGACGGGTTTACCTCGCTTCAGCATGGGTGACTCGACCGTGTTTCCTTTGTTTAGACTGGGAGAGTCTCGCTTTGACCAGggGTCGCTTTATGGTAGATTAAGACACTTCCTGGATGTGATTGACCCTCGCACACTCTTTGTATCAGagACTCGTCTAAATGAAAGTGTTAAACTCTTAGAGCACTTCAAAGCTGACACTCTACCCCCAGGTGTGACCAATGCACAGGCCATCCTCCATCCAGATACCGGAGAAAAGATCCCCATGCCCTTTCGCATGTCAGGTTACATCCCCTTTGGTACTCCAGTGGTTGTAGGCCTCTTACTTCCCAATCAGACCCTGGCATCCACCATCTTCTGGCAGTGGCTGAACCAGAGCCACAACGCCTGTGTGAACTACTACAATCGCAATGCCTCTAAGCCTACACCATTCTCAAAGTTCTTCCAAGGGTACCTGGGTGCAGTCAGCAGTGCAGTAACCATTgctgTAGGGCTAAATGTGCTGGTTAAGAGAGCTGATCGTTTCAGCCCAGCAACACGACTCCTGGTCCAAAGATTCATCCCTTTCCCTGCTGTGgCGAGTGCCAACGTGTGTAATGTGTTGCTGATGTGCCACAGCGAGTTGTCTGAGGGCATCAGTGTTCTAGATGAAGATGGAAATGTAGTGGGCACCTCCAAGCTAGCAGCCAGGCGTGCACTGTTTGAGACGGCTGTGACACGCATGGTCCTTCCCATGCCCGTTCTGGTGTTGCTGCCCATGCTGATGACTGTGCTGGAGAGacTGCCTCTTCTGCAGAGATACCCTCGTCTTGTGCTGCCAGTACACAGCCTGGTGTGTCTCGGTGCCTTCAGTCTGGCCCTGCCCCTCGCCATCAGTCTATTTCCACAAAACAGCCAGATTCATGTTTCTCAGCTTGAGCCAGAAATGTCTGTGGCGACAGAGTGCAAGGTCCTAACCTACAACAAGGGTCTTTAACCAATCAGGATGGTGGAACGCCAGGCGAAAAACGCCTGAAAATTGTGGGTCAGGAGATCTTCTTCATCAGATGGCTGTGAAGCTGTGAGTCCAAATTGCAGTGATGTAACGAAGCGTAGCGCAGCTCCACGCAGCCCGGTCATGCTAAAGAAGGCTGTGA
>XM_022684970.1
AAGGCATGTGCGACAGAAGCTGAAGTAAACTTCGGGTTTTATTACAGTATCATTGTAAATATTAACGTGTTCATTGTGTGGACGGGTTTACCTCGCTTCAGCATGGGTGACTCGACCGTGTTTCCTTTGTTTAGACTGGGAGAGTCTCGCTTTGACCAGggGTCGCTTTATGGTAGATTAAGACACTTCCTGGATGTGATTGACCCTCGCACACTCTTTGTATCAGagACTCGTCTAAATGAAAGTGTTAAACTCTTAGAGCACTTCAAAGCTGACACTCTACCCCCAGGTGTGACCAATGCACAGGCCATCCTCCATCCAGATACCGGAGAAAAGATCCCCATGCCCTTTCGCATGTCAGGTTACATCCCCTTTGGTACTCCAGTGTGGCTGAACCAGAGCCACAACGCCTGTGTGAACTACTACAATCGCAATGCCTCTAAGCCTACACCATTCTCAAAGTTCTTCCAAGGGTACCTGGGTGCAGTCAGCAGTGCAGTAACCATTgctgTAGGGCTAAATGTGCTGGTTAAGAGAGCTGATCGTTTCAGCCCAGCAACACGACTCCTGGTCCAAAGATTCATCCCTTTCCCTGCTGTGgCGAGTGCCAACGTGTGTAATGTGTTGCTGATGTGCCACAGCGAGTTGTCTGAGGGCATCAGTGTTCTAGATGAAGATGGAAATGTAGTGGGCACCTCCAAGCTAGCAGCCAGGCGTGCACTGTTTGAGACGGCTGTGACACGCATGGTCCTTCCCATGCCCGTTCTGGTGTTGCTGCCCATGCTGATGACTGTGCTGGAGAGacTGCCTCTTCTGCAGAGATACCCTCGTCTTGTGCTGCCAGTACACAGCCTGGTGTGTCTCGGTGCCTTCAGTCTGGCCCTGCCCCTCGCCATCAGTCTATTTCCACAAAACAGCCAGATTCATGTTTCTCAGCTTGAGCCAGAAATGTCTGTGGCGACAGAGTGCAAGGTCCTAACCTACAACAAGGGTCTTTAACCAATCAGGATGGTGGAACGCCAGGCGAAAAACGCCTGAAAATTGTGGGTCAGGAGATCTTCTTCATCAGATGGCTGTGAAGCTGTGAGTCCAAATTGCAGTGATGTAACGAAGCGTAGCGCAGCTCCACGCAGCCCGGTCATGCTAAAGAAGGCTGTGA

Function

symbol description
sfxn5a Predicted to enable citrate transmembrane transporter activity. Predicted to be involved in citrate transport and mitochondrial transmembrane transport. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human SFXN5 (sideroflexin 5).
sfxn5 Predicted to enable citrate transmembrane transporter activity. Predicted to be involved in citrate transport and mitochondrial transmembrane transport. Located in mitochondrion.

NR:

description
PREDICTED: sideroflexin-5

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684969.1 True 1213 mRNA 0.51 13 24658431 24678113
XM_022684970.1 False 1159 mRNA 0.51 12 24658431 24678113

Neighbor

gene id symbol gene type direction distance location
LOC103044475 rab11fip5,LOC108263817 coding upstream 783 24598605 ~ 24657648 (+)
LOC103046402 NA coding upstream 60916 24591088 ~ 24597515 (+)
LOC111195941 NA coding upstream 72966 24580100 ~ 24585465 (+)
LOC103043568 htra2,LOC107690150,LOC108263241,LOC106589831,LOC104960364,LOC103358855 coding upstream 128239 24522811 ~ 24530192 (+)
mrps26 mrps26 coding upstream 137477 24517414 ~ 24520954 (+)
cdc25b cdc25b,LOC108417292 coding downstream 101496 24779609 ~ 24787340 (+)
ap5s1 ap5s1 coding downstream 116777 24794890 ~ 24798599 (+)
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding downstream 506521 25184634 ~ 25192379 (+)
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding downstream 548328 25226441 ~ 25241001 (+)
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding downstream 632730 25310843 ~ 25315607 (+)
G218948 NA non-coding upstream 17384 24589310 ~ 24641047 (+)
G218920 NA non-coding upstream 87699 24567317 ~ 24570732 (+)
G218893 NA non-coding upstream 179209 24474824 ~ 24479222 (+)
G218853 pomk non-coding upstream 197122 24459393 ~ 24461309 (+)
G218842 NA non-coding upstream 336839 24318267 ~ 24321592 (+)
LOC111196006 NA non-coding downstream 111964 24790077 ~ 24792821 (+)
G219067 NA non-coding downstream 268611 24946724 ~ 24947071 (+)
G219069 NA non-coding downstream 331028 25009141 ~ 25009529 (+)
G219074 NA non-coding downstream 363124 25041237 ~ 25041789 (+)
G219102 NA non-coding downstream 406344 25084457 ~ 25084856 (+)
LOC103046104 LOC108441759 other upstream 191564 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 586805 24064495 ~ 24071626 (+)
G218758 NA other upstream 594643 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 629450 23981135 ~ 24028981 (+)
G218651 NA other upstream 950188 23696577 ~ 23708243 (+)
G219050 NA other downstream 164189 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 483614 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 578837 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 760606 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2522339 27200452 ~ 27236616 (+)

Expression


Co-expression Network