LOC111196037 (LOC105007542)


Basic Information

Item Value
gene id LOC111196037
gene name LOC105007542
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23950856 ~ 23953805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685023.1
CTCAATCAGACATTACTGTTGAGATATTGCTCCTGTAATATGACTGCCTATTGTAAGATTGGAGGATTATTCATCTACATACTTTTCTTTCTTGTACAACATGGAATCGGAAAGGAGTGCACACAAATTAAAAAGCATGGACAATATTCATGTGAGGGACGGAATCTCACCTACATACCTACCAGTTTACCTTCCTCTGTGAAGATTCTGGACTTTAGTTTTAACTTTTTGCCCACTTTGAAGAGGTCTGTATTCCCTCAGCTGAATGATCTGCAACATCTTGATCTTACAAGATGTCATATTCATCATATTGCTGATGATGCTTTCCTCAATATGAAGAACCTCACCACTCTAATTCTCACTGGAAACCCTGTCTCATATTTCGGACCTGATAGCCTGAATGTGCTACATAAATTACACAGATTAGTTTTGGTGGACACTGGCCTGTACTCTTTAAATGTCCGATTTAACAATCTCACCAAGCTTCAAGAACTAAACATTGGAACTAACAACATTCAGTCCATGGCTCTTCCACCGTTCATGATACACTTTGAAGACTTTAACTTACTGGATCTGCATGCTAATAACATTTCTATCTTAAAAGTAAGTGACACAAATATTCTTCAGCAGATGAAAGGAAATCTCACATTGATTCTCTCAAGGAACCCGATATTACACATAGAACCAGGAGCATTTCAAAACATGTACCTCAGAGAGCTTAACATTCGCAACGCCTTTGCTTCACTTGATGCCCAAAGGGATGGTCTAAAAGCCCTCAGTGGTCTTAATGTTGGCAAACTTGTAATTGGAAACTACATAGAAAATTCCATGTTAAAAACATCTGATGGTGATCTTAACGGCCTCTGCCTGATTAATTTTGAAGAAATAGATTCTCTCTGTGCTGGTTGGTCAGCGTCTGAATTACAGTGTATTGTCAATGCAACAAAAATCTCTATTGAAAGAGGAAATGTCAGAGCAATAGAAAATGTTCCATTTCAGGGAGTTAAAGAACTCCGCATTGTTGCCAATTACGTACCTGTTTTACTGAAACTTTCCCATCTGGAAACATTAGAAACCTTAGTGGTAATTCAGactaattatatacatattgtaGGAATCAGTGACATGCCCAGGCTCCAGCATATAGATCTAAGTCAAAACAGAGTACACATTACTGACTGCTGTGAAAACTACTTCAAGAGGATGCCGAATATTCGCAGCCTTAACCTGAGTAACAATGGAAATATGTATTTGAGCAACAACCCTATTACTGGACTTTCTTCATTAGAAGTTTTGGACTTACACCAAACAATTTTGGGAGGATTTTCTGCCCaatttgaactttttaaaaagctctggaatttAAAATATCTGGATATTTCATATACAGAATTTATGTTTAGGAGCACTATGAGTTTTGGCAGCTTAAACAGgttaaaagtactaaaaatgGCAGGCAACCATTTTCAAGGAGATGCGTTGAGTTACTTATTTGAAAATCTCACATCAGTGGAATACATAGACATCTCAAACTGTGAAATTGACAGCATAACCTGGAGAACATTTAAAGATCTTCCAAGATTGCAGCAGTTATTGCTTAATCAGAACAGATTGATGGTTTTGGATTTTGTAACCCATCCACATTTAAAAGACTTGAGATTATTAGAAGTTCACACAAATAATATTGGCAGCATTCCACTTAATATCCTACAAAATCTACCAAAAAATCTCACTGTTCTTGATTTGTCCTTTAATCCTATCGATTGTTCCTGTTCTCAAATTAATTTTATCTTATGGATCACTAGCCATCAGCAAATCTTCCCccagaaaaataacattttatgtaAATCACAATCACTGGGATCAAGGCATAAAACTATTGACTTTGACGTTGAAAGCTGTGTACACATCAGAAGATTTACTATTGTTACGTCTATATGTGCTGTGGTTCTTCTGGTTCTTGCTTCTTTCTTGGCCTACAGGTTCCAGTTTTACCTGCGTTATGGATATATTCTCCTTAAAGGTTATAGAACCTCCAGACAACAAGAATGGTCCTATGACGCGTTCGTGATTTATTCCAGTAAAGATGAATGCTGGGTAATCGATGAACTAGTGGAAAACTTGGAAAATGGAATTCCACCCATACATCTTTGCCTCCATGTGCGAGACTTTGAAGCAGGCAAGGCCATCACCTCCAACATTATAGACGAGGGCATTATGGGCAGTCGTAAAATTATAGTGGTCATATCTAAACACTTCACTGACAGCTCTTGGTGTAGATTTGAGTTTGAAGTGGCCCAGTCCTGGCTAGTGACACAAGGCAATcccaacatcatcatcatcattttggAAGATGTTGAAGAAGAGAAGACAAAGAAAGTGTTTGGGCTTCACAAACACCTGAAAAAGAACACTTACCTGAAGTGGAGCTCAAATCCCATAAATAACATGAGATTCTGGATTCGTCTCAGAAAAGCTGTtataacgtaaaaaaaaaagcttgtcttatttgtgttttacttCCCTGTTTACAGT

Function

NR:

description
PREDICTED: toll-like receptor 4 isoform X3

GO:

id name namespace
GO:0002224 toll-like receptor signaling pathway biological_process

KEGG:

id description
K10160 TLR4, CD284; toll-like receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685023.1 True 2535 mRNA 0.37 3 23950856 23953805

Neighbor

gene id symbol gene type direction distance location
LOC111195940 LOC108263518,LOC108444380,LOC108442180 coding upstream 17244 23932621 ~ 23933612 (+)
LOC103039990 LOC105007542 coding upstream 18285 23929762 ~ 23932571 (+)
LOC103030417 si:ch211-198a12.6,LOC103030417,LOC108444387,LOC108263519,LOC107747450,LOC107589522,LOC107690167,LOC107678580 coding upstream 24743 23920183 ~ 23926113 (+)
stox1 stox1 coding upstream 33604 23896582 ~ 23917252 (+)
ccar1 ccar1,LOC107690173,LOC107582549,LOC107708455,LOC107747452 coding upstream 71454 23859143 ~ 23879402 (+)
LOC111195965 LOC105007542 coding downstream 5269 23959074 ~ 23962101 (+)
LOC111196020 LOC105007542 coding downstream 11837 23965642 ~ 23969331 (+)
LOC103042015 LOC108441770 coding downstream 16885 23970690 ~ 23977592 (+)
pdzd7 pdzd7,LOC107690160,LOC107678494 coding downstream 138372 24092177 ~ 24130745 (+)
LOC103045799 cpxm1,cpxm1a,LOC107678553,LOC107708467 coding downstream 475867 24429672 ~ 24446638 (+)
G218743 NA non-coding upstream 5044 23945558 ~ 23945812 (+)
G218742 NA non-coding upstream 12582 23938070 ~ 23938274 (+)
G218688 NA non-coding upstream 170352 23780213 ~ 23780504 (+)
G218681 NA non-coding upstream 187419 23763218 ~ 23763437 (+)
G218680 NA non-coding upstream 188096 23762247 ~ 23762760 (+)
G218754 NA non-coding downstream 58070 24011875 ~ 24019458 (+)
G218795 sfxn3,LOC103040609,LOC108263463,LOC108441766,LOC107708462,LOC107678536,LOC105911632 non-coding downstream 129134 24082939 ~ 24091553 (+)
G218799 NA non-coding downstream 180371 24134176 ~ 24137086 (+)
G218836 NA non-coding downstream 327900 24281705 ~ 24282056 (+)
G218841 NA non-coding downstream 363837 24317642 ~ 24318194 (+)
G218651 NA other upstream 242613 23696577 ~ 23708243 (+)
kcnma1 kcnma1,LOC108263740 other upstream 1132742 22563798 ~ 22818114 (+)
G218351 NA other upstream 1731996 22217299 ~ 22218860 (+)
mark3 mark3 other upstream 1852597 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 3535213 20335947 ~ 20415643 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 27330 23981135 ~ 24028981 (+)
G218758 NA other downstream 105406 24059211 ~ 24063788 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other downstream 110690 24064495 ~ 24071626 (+)
LOC103046104 LOC108441759 other downstream 489486 24443291 ~ 24466867 (+)
G219050 NA other downstream 888497 24842302 ~ 24842533 (+)

Expression


Co-expression Network