LOC103046445 (lgmn)


Basic Information

Item Value
gene id LOC103046445
gene name lgmn
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 35462358 ~ 35485086 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685031.1
GTTGCACCGCCCCTTTAGGTCTGTATTAAAACACAACGGTGTGTTTTCGCCTGGTGCAATTCCACGAGACGACCAGCGTACAGTTCTCAGGGAAGGTGTAGTCTGTAGAGATGGAGTGGCGCTCAGTAGCAGTGTTGgcgctgtgtgtggtgtgtgtgattggATTCCCTGCAGAACTGACAGAGGAAGGGAAGAACTGGGCCGTGATCGTGGCCGGATCCAATGGATGGTACAACTACCGGCACCAGgCTGATGCTTGTCACGCATATCAAATTCTTCATAAGAATGGAATCCCTGATGAGCAGATTGTGGTGATGATGTATGATGACCTCGCTCAAAATGAGGAgaacCCTACTCCAGGAATTGTCATCAACAGGCCGAACGGGACAGATGTTTATAAGGGGGTGGTAAAGGACTACACTGGTGATGGCGTGACCCCCCAGAACTTCCTGGCTGTGCTGAAGGGCGATGCGGCCAGTGTGAAAGGAGGATCTGGAAAAGTGCTGAAAAGCGGCCCGAACGATCATGTGTTCGTGTACTTCACTGATCACGGCGCTCCTGGACTCCTGGCCTTCCCTAATGATGATCTTATGGTCAACGACCTGATGGACGCCATTCAGTACATGCACAAGAACCAGAAGTACAAGaagATGGTGTTCTACATTGAGGCGTGTGAGTCTGGCTCTATGATGAAGCCCCTGCCTGTGGACATTGATGTTTATGCCACGACTGCTGCAAACCCTCACGAGTCCTCTTACGCCTGTTACTATGATGAGAAGAGAGACACCTATCTGGGAGACTGGTACAGTGTTAACTGGATGGAGGATTCTGATGTGGAGGATCTGACTAAAGAGACGCTGGCTAAGCAGTTCAAAATCGTTAAAAGTCACACCAACACCAGCCACGTCATGCAGTATGGAAACAAGactcTGGCTCATATGAAGGTGATCGAGTTCCAGGGTAACGCTCTGGGCGGAGCTCCAGTTGCTGCACCCATGTCATTGCCCCCGATTAAGGAGCACAGTCTTACACCCAGCCCAGATGTCTATCTGTCCGTCCTGAAGAGGAAGCTCATGAAAACCAACGACATCAACCTCGCCAGGGGATATGCAATGGAGATCAACGCCCACCTGAAGGTGCGTAAGCTGCTGGCAGACACCATGCGTCAGCTGGTTGGGAGAGTGGTGGAGGATGAGCAGGAGCTCCAGAACATTTTGGACGAGCGCCAGGAGGTCACCCAACATGAGTGTTACAGAGACGCCCTCACACACTTCAAAACACACTGCTTTAACTGGCACAACCAGcagtatgAGTACGCTCTGAGGCATCTCTACGTGTTGGTCAATCTGTGTGAGAGAGGATACCCAGCGCAGAGGATTTTGGCAGCTGTGGATAATGTGTGCTACTTCCGACAGTAAAGGcttccacacatacacacacacaaaaacacacacacacattctctgaGTGGAGCTGGCCACTGTGACCTCGTCTGGTGGATGATTTTGCTTTTTGCACAAAGGAATCTGATCTGAGAATTTATGTCCACTCACAATCACACTGTTCACactattttcactttttgattttttttttttattaagccgTTTGTTTTAAGGAGAATTGGAGAATTgcactattttaaaatgatgtttttgttcttttacttTGAAATGTGAATGTTTTGCTGCTTTGCAATTTTTAAATTGACAAATTAGTGGGTTAAACATTCAGTGACCTTAAAAACTGACCAGATACtgacaaaaaaatgacattagACGCTAAAGTAGCTGTTGGAGAATTAGGCCTGCTGGGTTAGTCATACTGACCCACTGCACACTTTTAACCAATTTCATTTAATCTGCTGCCTGATGCTGATTATAGTCACTTTActgctcacaaaaaaaaagagtttagtaGTGACACCTAGTGACTCCTAGCAACTCTGCCGCTCTGCATACAGTACAGTCTGTATGTGTCCGATTCAGATGTGTAGAGCTGTTCTACATTAATACACTGTTTTACATGATGAACTGTGCTGAACATGTAACTGAGGTGAAACACCACACACGTGAATCAGTTGAATTCAGAATGCAGAATTTTTATTTCAGGCTTATTTTAGTGCATAAGGACGAGATGTTTTATCTTCCTAGCTTTTCTAAATTAAGTGACCTTACGAGGCTCCAGGCTGAGGAGGAAATGTAGCGGCTGTggggttttattgttttacttgttttaaatcTCTTATTGGATCGCGGCTTTGTTTCTGTGGATGTGTGGAGCTCCGTTTTGGTCacttttgggtcaaactttgtTCATGACAAATGTAAACTGACACTGCAGAAGCCAGAAATTTGCCTTTATTAATAGTAAGTGTTCTACTGAATCAGCAGGGTAATGTGATGGAAACAGTCTAAACCTTCAGCTGATGTATGCATGTTAGAGCTGTAGTTTATAACTGCAGTGTATTACACTTAAACTGCTGTGTTAAAAAGAACTTCATAAGTGATATTAGTCATTATTCAGTATATGCTACACACTATGTCTCGGGCCTGTTCAGAGTGAGTGCAGTGAGTGAGTAACAGGAACAACAGGCCCTAAACCAAAGCAGACTGGTGATGTTCTACTGTCTGTTTAGCTGTGAGACTGATTAAAGAGTTATGTCTGAAAATAA

Function

symbol description
lgmn Predicted to enable cysteine-type endopeptidase activity. Acts upstream of or within several processes, including axon regeneration; negative regulation of bone mineralization; and negative regulation of osteoblast differentiation. Is expressed in several structures, including cardiovascular system; immature eye; mesoderm; nervous system; and pleuroperitoneal region. Orthologous to human LGMN (legumain).

NR:

description
PREDICTED: legumain

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K01369 LGMN; legumain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685031.1 True 2674 mRNA 0.45 15 35462358 35485086

Neighbor

gene id symbol gene type direction distance location
pcnx1 pcnx1,pcnx coding upstream 5865 35385703 ~ 35456493 (+)
med6 med6,LOC107654960,LOC107602956 coding upstream 80912 35376737 ~ 35381446 (+)
map3k9 map3k9,LOC107705427,LOC107654958,LOC107602953,LOC107553203 coding upstream 114046 35324800 ~ 35348312 (+)
slc8a3 slc8a3,LOC107654959,LOC107602954,LOC107705428,LOC107091425 coding upstream 153447 35234443 ~ 35308911 (+)
actn1 actn1,LOC108440922,LOC107705429,LOC107602958,LOC107654957,LOC107739883,LOC103359947,LOC108261236,LOC107680897 coding upstream 253532 35152330 ~ 35208826 (+)
LOC103029802 LOC108440917 coding downstream 34326 35519412 ~ 35556136 (+)
klhl31 klhl31,LOC107664702 coding downstream 378780 35863866 ~ 35868147 (+)
elovl5 elovl5,LOC107664697,LOC105911564 coding downstream 415820 35900906 ~ 35937685 (+)
arfgef3 arfgef3,LOC107751324,LOC107712337,LOC107688785 coding downstream 493175 35978261 ~ 36063654 (+)
cnrip1 cnrip1,cnrip1b,LOC107699127,LOC107736745,LOC107580235 coding downstream 585171 36070257 ~ 36075234 (+)
G221540 NA non-coding upstream 2988 35443213 ~ 35459370 (+)
G221545 NA non-coding upstream 29664 35391684 ~ 35432694 (+)
G221527 NA non-coding upstream 146468 35309502 ~ 35315890 (+)
G221522 NA non-coding upstream 218407 35199650 ~ 35243951 (+)
LOC111196036 NA non-coding upstream 317436 35135879 ~ 35144922 (+)
G221551 NA non-coding downstream 72217 35557303 ~ 35727535 (+)
G221559 NA non-coding downstream 75747 35560833 ~ 35566330 (+)
G221563 NA non-coding downstream 133468 35618554 ~ 35623518 (+)
G221671 NA non-coding downstream 243814 35728900 ~ 35729467 (+)
G221682 NA non-coding downstream 270745 35755831 ~ 35760992 (+)
LOC103031497 NA other upstream 243980 35208431 ~ 35218378 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other upstream 436760 35018442 ~ 35025598 (+)
synj2bp synj2bp,LOC108411060 other upstream 465314 34986999 ~ 34997044 (+)
G221390 ate1 other upstream 1279121 34162581 ~ 34183237 (+)
G221292 NA other upstream 2017637 33444117 ~ 33444721 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other downstream 384932 35870018 ~ 35888815 (+)
G221728 fbxo9 other downstream 484903 35969989 ~ 35972354 (+)
G221737 NA other downstream 567430 36052516 ~ 36056690 (+)
G221878 NA other downstream 918062 36403148 ~ 36409041 (+)
mnat1 mnat1 other downstream 1491320 36976406 ~ 36991484 (+)

Expression


Co-expression Network