LOC103039918


Basic Information

Item Value
gene id LOC103039918
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6150688 ~ 6159645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685039.1
CCACCAAAGCCAAACACCAGAGTGATGTTTCTGAACAGCAGAAACTAGATTCCTCTTTAAGTAAGGATAAAAAGGTACCGCCGAGTTTAGGCTTAGACCAGATGACACAAGCAGTGATGAGTTATACTGTGCATCCTTCTGTAAATCAGCGCAAAACTCCAAGAACAGTCCCCCTCAGTGCATCATCAACGTATAAATCAAGGAAAGACTGGAGGAAACCATACAGAGGTTCAGCTCACTCAAAAAGAAATCATCACACTAGTGGACTTCGAGATAAGCACCACAAGGAGTGGCAGGAACATCATTCTCCATCCCATTCTGTATCTCCGACGCCTTCATGGTCTCCCAGCCCTCCACCCTTTAGCCACCAAATACGCTCCCAAAGCCCTCAAAGCTCTGGTAGATACAGCCCTTCTGATCTTGTATATGGATCCTCTTCTTCTGAACATGGACCTTCAGAAAAGAAGGGAGAACATCCAGGTCATGAGAATTTGACGAATAAGCATGTGGACGTCATTAAGCGAAAAGTTGGTCCAAATCCAAATGGAAAAGGGCAATTTAAGAAAAAGAAGGCCACCTCAAGTGTCTCTGTTGCCTGcttttcagaccacaaatatCCCTCCTCTAAAACGATGGACAAGGACAAATACAAAGCTTCAACTTTCATGTCCTCTTCCTCATCAGTATCTAATTCTAAGACACACACATCCATGGACGCATCCTCTCGAAATGTTCAGCAAATAGATACAGATATaatcaaaaaagaaaaggatCTTGGGGACACAGTTGTGTCTCCATCTCCAAAGTGTCACTTGGGTCTCCCTGCTGAAGCAAAGTACCAGGATGTCTGTCATTCTTTGGCACCCTTTGGTGCAGTAAAGGAGCAAAACATTTTCCCTGGTCTGGAAAAGCTGTCAACAGTGTCGAATCTAGTTGTCCACACATATGATTGGCAAGGAAAAGTTCAGATCAAGCAACCAGTGGTTCCCATGGACAGtGGTGAGGCATGTTTGATTACACCACCCACTGTTGAAGGAAAGAAAGGGGTTATTTGTATATCTGGAATTCCTTTTAATCACTCTGAGGGTGACCTTATCAAACTGGTCAAACCTTTTGGTAAGCCTATCAAGATTCTCATAGCAAATGAGATTGATCTAGTTAATGGCCTGGACTGGAGGAAGGCATTGGTGGTGCTTTCAAGTGAACTATCAGCAATGGAAATAGTAAAAGTTTACTCTGTTGTTCCTGTGCATTTAAGGGAATATGATGTGACACTAGCACCCCAAGCTGTGGACTTCAGTTCAACTgTGTCATTATTTCAAGCCCTTATTACACCGACATACTATAATGGTTCATTAATACCTTGTGAGCACTTGCTGGTGGTCAGAAACATCCCAGACCATCCACACATATCTACAGATGTGCTGCAGCAAGTGCAGTTATTCGGTAAAGCACTGAGAGTGTTGGTGCTTCCAGAAGAAAAGACTGCAGATCACCGAAATGTGCTTGTTAAGGAGAACACTCACTGCGTCATGATGATCTTTGAGATGAAGTCTTCAGTGAATGTTTTGGAGGCCTGTGAATGGTTTCAGAAAAGTAACTATATTTTTAATGATCATCGCCTGCAGTTTTCCATGTGGATGAAACCTCAAAAAGCCACATCTGGGGTCATAGCTAACAGCAAGAGCTGGAAAAGACAGATGGCAGAGGAACACTGGGGACTTAAACACAATGATACAAGTCCCTGGATACCTGAATCTGTGGAGGGAGTTTTGGTCTTTATCTCTGGTTTTCCTGATAATATGGATTCTGAAGATGGCTTTATCCAGATAGCGGCTCCTCATGGTATCCCCACTAACATTGTTATTGCAGCTGCTCAGAGAAAGGCTTTGGTGGAGCTTCCTGATAAGGACTCTGCCAAAAAGATGGTCATCGCTTATAATGCAATCCCAGTGGGTTTAAAACAACTAGACATGAAACTCCTGCCCAAAACAGTGGATATCAACAATCCTGTATCACTTTTTCAAGTCATAATGGGCCCAGAAAATCATGGCGAAGATGTTCCAGATCCATTACTCCTGATTACAGTTGCTAATGTGCCAGATACTCTTAGTGGAATCTCACAGGTGCAGCAGTTAATACAGGCATATGGAGCAGTAAACCGTACTCTAATTCTCAGCAACAACATGatcatatTTGAAATGAAAACATCTGAAATGGCAAGGTTGGCTTATGAACAGCTGAAAAAGCTACCTTACACTGTACAAAAATGTACGTTGTCTTTTTTCTGGGGTTCAAGTCAAATTTCAGAAACAACAAAGGAAGGAGATGTCCCTATACCTGCTCAGAGACCTGAAACCAGCATTCAACATTTCTCCTGTTGTGTGAAAAAGGGAATGCAAGCCTTTAGCAAAACACAAGGGATGGACGAATGTGAAAGAAACATGAAAAGATCAAAGAAAGCCTATAAACGAGAAGGCAGGATTTTGCAGTTACAGTCAGAGGTTGGAAATCAGGtcaaaaatcaaaagaaaaccAAAGAACCTGAAAAAACAGgattaaaacacagaagagagTGTCTTTTGCAAAAAGCAAAAACCTTTCTAAAGAAGAGAAATATCACCACGCCAGTCTTCCCTGATGGATATAATCTTGTGCCATTCAACCCAGAATTACCCATAGGTAAAATATAACagcatttatacagtatattgcaacTGTTTATCATGCTCTGATATCTTATGATGTTGTGTAATTCTAGGGCCAATTGTAAAATCAACATACAGTGGCATACAAAAGTTTGACCTCCCTGCTCCAAGTGTTTGTTACTGTGAATATCTATAAAATCACAGATCTGATCTATAAAAAGGCATCAACCTAAAGCATTTCACAGAAGATTAGAGTATTTTTTTGCGTACAATTTTTGAGcacatgca
>XM_022685040.1
CCACCAAAGCCAAACACCAGAGTGATGTTTCTGAACAGCAGAAACTAGATTCCTCTTTAAGTAAGGATAAAAAGGTACCGCCGAGTTTAGGCTTAGACCAGATGACACAAGCAGTGATGAGTTATACTGTGCATCCTTCTGTAAATCAGCGCAAAACTCCAAGAACAGTCCCCCTCAGTGCATCATCAACGTATAAATCAAGGAAAGACTGGAGGAAACCATACAGAGGTTCAGCTCACTCAAAAAGAAATCATCACACTAGTGGACTTCGAGATAAGCACCACAAGGAGTGGCAGGAACATCATTCTCCATCCCATTCTGTATCTCCGACGCCTTCATGGTCTCCCAGCCCTCCACCCTTTAGCCACCAAATACGCTCCCAAAGCCCTCAAAGCTCTGGTAGATACAGCCCTTCTGATCTTGTATATGGATCCTCTTCTTCTGAACATGGACCTTCAGAAAAGAAGGGAGAACATCCAGaccacaaatatCCCTCCTCTAAAACGATGGACAAGGACAAATACAAAGCTTCAACTTTCATGTCCTCTTCCTCATCAGTATCTAATTCTAAGACACACACATCCATGGACGCATCCTCTCGAAATGTTCAGCAAATAGATACAGATATaatcaaaaaagaaaaggatCTTGGGGACACAGTTGTGTCTCCATCTCCAAAGTGTCACTTGGGTCTCCCTGCTGAAGCAAAGTACCAGGATGTCTGTCATTCTTTGGCACCCTTTGGTGCAGTAAAGGAGCAAAACATTTTCCCTGGTCTGGAAAAGCTGTCAACAGTGTCGAATCTAGTTGTCCACACATATGATTGGCAAGGAAAAGTTCAGATCAAGCAACCAGTGGTTCCCATGGACAGtGGTGAGGCATGTTTGATTACACCACCCACTGTTGAAGGAAAGAAAGGGGTTATTTGTATATCTGGAATTCCTTTTAATCACTCTGAGGGTGACCTTATCAAACTGGTCAAACCTTTTGGTAAGCCTATCAAGATTCTCATAGCAAATGAGATTGATCTAGTTAATGGCCTGGACTGGAGGAAGGCATTGGTGGTGCTTTCAAGTGAACTATCAGCAATGGAAATAGTAAAAGTTTACTCTGTTGTTCCTGTGCATTTAAGGGAATATGATGTGACACTAGCACCCCAAGCTGTGGACTTCAGTTCAACTgTGTCATTATTTCAAGCCCTTATTACACCGACATACTATAATGGTTCATTAATACCTTGTGAGCACTTGCTGGTGGTCAGAAACATCCCAGACCATCCACACATATCTACAGATGTGCTGCAGCAAGTGCAGTTATTCGGTAAAGCACTGAGAGTGTTGGTGCTTCCAGAAGAAAAGACTGCAGATCACCGAAATGTGCTTGTTAAGGAGAACACTCACTGCGTCATGATGATCTTTGAGATGAAGTCTTCAGTGAATGTTTTGGAGGCCTGTGAATGGTTTCAGAAAAGTAACTATATTTTTAATGATCATCGCCTGCAGTTTTCCATGTGGATGAAACCTCAAAAAGCCACATCTGGGGTCATAGCTAACAGCAAGAGCTGGAAAAGACAGATGGCAGAGGAACACTGGGGACTTAAACACAATGATACAAGTCCCTGGATACCTGAATCTGTGGAGGGAGTTTTGGTCTTTATCTCTGGTTTTCCTGATAATATGGATTCTGAAGATGGCTTTATCCAGATAGCGGCTCCTCATGGTATCCCCACTAACATTGTTATTGCAGCTGCTCAGAGAAAGGCTTTGGTGGAGCTTCCTGATAAGGACTCTGCCAAAAAGATGGTCATCGCTTATAATGCAATCCCAGTGGGTTTAAAACAACTAGACATGAAACTCCTGCCCAAAACAGTGGATATCAACAATCCTGTATCACTTTTTCAAGTCATAATGGGCCCAGAAAATCATGGCGAAGATGTTCCAGATCCATTACTCCTGATTACAGTTGCTAATGTGCCAGATACTCTTAGTGGAATCTCACAGGTGCAGCAGTTAATACAGGCATATGGAGCAGTAAACCGTACTCTAATTCTCAGCAACAACATGatcatatTTGAAATGAAAACATCTGAAATGGCAAGGTTGGCTTATGAACAGCTGAAAAAGCTACCTTACACTGTACAAAAATGTACGTTGTCTTTTTTCTGGGGTTCAAGTCAAATTTCAGAAACAACAAAGGAAGGAGATGTCCCTATACCTGCTCAGAGACCTGAAACCAGCATTCAACATTTCTCCTGTTGTGTGAAAAAGGGAATGCAAGCCTTTAGCAAAACACAAGGGATGGACGAATGTGAAAGAAACATGAAAAGATCAAAGAAAGCCTATAAACGAGAAGGCAGGATTTTGCAGTTACAGTCAGAGGTTGGAAATCAGGtcaaaaatcaaaagaaaaccAAAGAACCTGAAAAAACAGgattaaaacacagaagagagTGTCTTTTGCAAAAAGCAAAAACCTTTCTAAAGAAGAGAAATATCACCACGCCAGTCTTCCCTGATGGATATAATCTTGTGCCATTCAACCCAGAATTACCCATAGGTAAAATATAACagcatttatacagtatattgcaacTGTTTATCATGCTCTGATATCTTATGATGTTGTGTAATTCTAGGGCCAATTGTAAAATCAACATACAGTGGCATACAAAAGTTTGACCTCCCTGCTCCAAGTGTTTGTTACTGTGAATATCTATAAAATCACAGATCTGATCTATAAAAAGGCATCAACCTAAAGCATTTCACAGAAGATTAGAGTATTTTTTTGCGTACAATTTTTGAGcacatgcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685039.1 True 2936 mRNA 0.41 21 6150688 6159644
XM_022685040.1 False 2811 mRNA 0.41 21 6150688 6159645

Neighbor

gene id symbol gene type direction distance location
LOC111195931 NA coding upstream 40422 6104774 ~ 6110266 (+)
lrpap1 lrpap1,LOC107749950,LOC107714242,LOC107551171,LOC107674255,LOC107556528 coding upstream 446839 5689706 ~ 5703849 (+)
LOC111195958 NA coding upstream 690184 5459757 ~ 5460504 (+)
LOC103044852 LOC108434764,LOC107671567 coding upstream 722923 5415209 ~ 5427765 (+)
LOC103034165 LOC108434807 coding upstream 741186 5401342 ~ 5409502 (+)
LOC111195932 NA coding downstream 20605 6180250 ~ 6184176 (+)
LOC103039606 paip2b,LOC103039606,LOC107551309,LOC107674237,LOC108263850,LOC108426126 coding downstream 133465 6293110 ~ 6299551 (+)
LOC103039100 NA coding downstream 143071 6302716 ~ 6312607 (+)
LOC103038786 LOC103368813 coding downstream 155207 6314852 ~ 6324230 (+)
trnak-cuu_9 NA coding downstream 166340 6325985 ~ 6326057 (+)
G214134 NA non-coding upstream 37678 6112603 ~ 6113010 (+)
LOC111195966 NA non-coding upstream 63091 6086759 ~ 6087597 (+)
G214126 NA non-coding upstream 64187 6086241 ~ 6086501 (+)
G214125 NA non-coding upstream 80934 6069424 ~ 6069754 (+)
G214121 NA non-coding upstream 113483 6035494 ~ 6037205 (+)
LOC111195955 NA non-coding downstream 58741 6218386 ~ 6235720 (+)
G214174 NA non-coding downstream 116069 6275714 ~ 6275923 (+)
G214215 NA non-coding downstream 221299 6380944 ~ 6473744 (+)
G214227 NA non-coding downstream 309828 6469473 ~ 6470200 (+)
G214283 NA non-coding downstream 421649 6581294 ~ 6581733 (+)
G214006 NA other upstream 629013 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 790956 5349167 ~ 5359732 (+)
G213891 NA other upstream 976592 5173069 ~ 5174096 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other upstream 1560236 4510939 ~ 4590452 (+)
G213715 znf330 other upstream 1721726 4398585 ~ 4428962 (+)
G214175 NA other downstream 124136 6283781 ~ 6284368 (+)
LOC111196031 NA other downstream 239431 6399076 ~ 6409068 (+)
pold4 NA other downstream 1651333 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1696517 7856162 ~ 7877118 (+)
G214773 NA other downstream 1951303 8110948 ~ 8111325 (+)

Expression


Co-expression Network