CI01000009_02403219_02417215 (FAM160A2)


Basic Information

Item Value
gene id CI01000009_02403219_02417215
gene name FAM160A2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2403156 ~ 2417215 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02403219_02417215.mRNA
ATGCTAAGACAATATGAAGTGTCACTGGTTATGATAAAAATACAGGAAGTGTTGTTGCATTTGTTTAGACCACAGGAAGAGCTGTGGGACTGTAAAACATCACAGGAAGCCTACTGGTATAGATGTTGTCTGCAGGTGTGTGTGGAGGAGTCTATGCATCGGGGTCCAGGCACTCGGACCGGTCGACATGCAGCCCCATCCAGCCCATGCACTGCCGACCCCGAGACCTGTCTTATGGTGTTTGAGAACCACTGGAGACAGGTGTCAGGTGTGTTGAAACAGAGAGAGTCTTCAGTGGGTGGTTGTGCCGATGATCTCACAGCAGTTCGCAATCACACAGATCAGATGCTGTGCCTGCTAGCTGAAGAGAGACCAGCAGGGGGAGACATTGAATCACCAGCAATGGGTCCTATTCTGGAGATGGTGGTGGCGGAGAACATTCTGGAAGAGTTGGTACAGTGGCATGTGCACCATGGTCTAGATCCGGACAGCCAGCTAGAGCTGTTGAAACTGTTTGAGATGCTAATCGGACAGTCACATCAGCCACTGCTCCTGCACAGTGCAGTGCTGCAGCCGCTGCTAAGCCTGCTGGGAGCATGTGTGGATCCCCAGCTGGGCTGCCCTCCTGCCCTAGAGTCCAGCCTCGTACTGCTGCTAAATCAGGTATGTGTGTCCATGGCGAAAGAAACTGCCGTTTTGGAGTTGTTATTTAGGTGTGGGCCGGTACAGCAGGGTCCCACTAACCTGCTGATCTTCTCCCTGTTGGTGCCATTTATCCACCGAGACGGCGCTCTGGGGCAGCAGGCCCGTGACGCGCTGCTCCTCGTCATGGCAACCTCTGCCAGCAACCACGCTGTTGCACGCTACATTGCTGAGAACTCCTACTTCTGCCCAGTGCTAGCGACAGGGCTGAGTGGACTATATTCATCCCTGCCACGGAAGATTGAGGTACGGGGCGACGACTGGCATGCACTGCGGAGGGAGGACTGGATGGGCGTCTCCTCTCTAGTGCTGTTCATGAACAGTCTTGAATTCTGCAATGCTGTAGTACAGGTGGCACACCCTCTTGTGCGCTGCCAACTCCTTGACTACCTCCACAACGGCTTCCTGGTGCCAGTCATGGGCCCTGCTCTGCACAAGTCGTCGGTGGATGAGATGATAGCAAGCACGGCATATCTGGACTTGTTTTTACGCAGTATCACAGAAACTTCCCTCCTTAAGACCTTTCTGCGCTTCATTCTGTTGCATCGCCATGACAACGACACCATCCTTGATACACTACTCACACGCATCAGCAGCAATTCACGGCTGTGCATGGTCTCTCTGAGTCTGTTCAAGACTTTGCTCAGTCTCAACTGTGAAGACCTCATGCTCCAGCTTGTTCTCAGGTATCTGTTGCCATGCACACATGTAATGCTGAGTCAGCGGAGGGCAGTCAGAGAAACAGACCTCTATGGCAAATCAGCTGACAAGTTCCTTTCCCTCATACCAGAATGCTGCAGAATCACTTCAGCACCCTCTAGTGAGCGGGATGATGAACCTGCTTTTTGGGGAAAGGAAGGAGAGACTGGCTACCTAGAGTATCTACGTGACGCTCGGAAGGGTATTGAGCTCTGCTCCTGGGCCTGTCGAGACTGGTCGGCACCTTACGATGGAGAAAATCCCTCTCCAAACTCTGTTCCTCCTCCACCTCCCCCTCCTACATCCAACCCCTCCCTCAGTGTGGTACCAGAGCATTTCTCTGTAATGGACACCGCTCAGCAGAGGGCAGCAGTGGTGGCTGCAGCTCGTGCCGAGTGGAGCAGTTCAGATCGAGATAGTGGAGAGTGGGATGTTACCATCAGCAAGAACTGTATCAGTCTCACACCCCGCAGTAAGAAACGCAGCCTTCTTCCCAGCTCTTTACCCCTACAATCTTCATCTTCTGCATCAGTCTCTACGGAAATAACAGGTGCTGTGGAAACCGTGTCCCAGCACTCTCATTCGGCACCTCATCCAGCACTCTTCAATGGGATGGGGCAGGTGGAGTTCACAGACAGTGTGGATGAGAGAATGGAGGTTAAGAAAGTGAAGAGGGAGTCGGATGTAAATAGCACCGTGGTTGAGTCGGGGATGAATGGGTCGATGGGTATGGGCCCAGTCGACTACAATGATTTCCATGTAGGATCGGCGCTGAAATCATCTCAGGTGCAGTTGAAGCCACATCTGCAACATCAAACCTCCGTGCCCTCCTCTGCCCAAGAGTGTCTGCAAAGCGAGGGCCAGAGATTGTCTCCTGTTCTTGGCTTGACAGAGACCTCCACAGTGGCCCGGGACAGCAGGGGTCCGGAGTCCGTTGAGCGTCTGATTGAGGAGTTGCTGGAGCGGGCGCCGTCAGAGCCATTGTCTGGTGACTCGAAATGCCAGGGAATCAGCATTGAGGCTTTCCACCAGGAGCTGAGGGAGCTGGAGGAACGTGTAAGAGAGAGGAGGGTTCTTTCACGCAGCTCGGAGGAGTCCTCTCGGGATTCCCGTGCTGCTCCTGCTCCCAGCCTGACAGATGAGGACTGTCCAGTGGAGACTGAGCAGCGCTCCAGTGAAACGAAGCCTGACAGCTCTACCACTGGGGTATTTAGCCCCGCACGACCCCTTGGACAACCTCTCGCTCAACCGTACACAGGTCCATTTATAACAGTCCTGTTCAGTAAACTGGAGAGTATGATGCAGAACTCCCTATATGTGAACATTTTGCTGACGGGCGTTGTGTTCCAGCTGGCCTGTTACCCTCAGCCACTCCTACGCTCTTTCCTCCTCAACGCCAACATGGTGTTTCAGCCCAGCATTAAATCACTCATACAGGTGCTGGGATCAGTAAAAAATCGCATAGAGGCATTTGCAGCAACACACGAGGATTTCCCTGCCATGTTAAGAAAGGCTCGCCGCTTTCTGGTTGCGAGAGGAAAGTTAGACTGGTCCGACTCACCCATGGGAGTGCCCAGCCTCCGTCGGTCAGACTCATTAATTAAAAGCCGCAAGCCATCTTTGGGCGATCTTATCTTGAGGCACACCAACAGTCCTACGAGAGCTCGACATGCAGCTCAGTTGGCCTTGGCCCACGTAAGAGATGGAGGGCAGTCCCTGCACAGTGCTTTGTTCCGGGGTGGTGTGGCCGGTGGGACCTCTGGCCTGGAGAAGCAGGCAGAGGCACTAAGGGTGAAAAATGCAGTCTACTGTGCTGTCATTTTCTCTGAGTTTCTCAAAGAGCTCGCAGCTCTTACACAGGAGCATGCCGTAGCCCTACCCTTCCCACCCAGTCAAGGCACTGAGGAATAACACCAGGACAAAATTTGTTTCCAAATTTCCACTGTTCCTGGCACTGATCTGTAGACTAATATA

Function

symbol description
fam160a2 Predicted to be involved in several processes, including early endosome to late endosome transport; endosome to lysosome transport; and protein localization to perinuclear region of cytoplasm. Predicted to act upstream of or within protein transport. Predicted to be part of FHF complex. Orthologous to human FHIP1B (FHF complex subunit HOOK interacting protein 1B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02403219_02417215.mRNA True 3375 mRNA 0.53 14 2403156 2417215

Neighbor

gene id symbol gene type direction distance location
CI01000009_02391182_02393863 NA coding downstream 9293 2390445 ~ 2393863 (-)
CI01000009_02358636_02361913 HPX coding downstream 41207 2358470 ~ 2361949 (-)
CI01000009_02352214_02356619 NA coding downstream 46315 2352214 ~ 2356841 (-)
CI01000009_02327693_02335035 NA coding downstream 68121 2327693 ~ 2335035 (-)
CI01000009_02300395_02301213 OLIG2 coding downstream 101519 2300109 ~ 2301637 (-)
CI01000009_02591882_02593586 RPL8.S, RPL8 coding upstream 174648 2591863 ~ 2593761 (-)
CI01000009_02610459_02610721 NA coding upstream 193045 2610260 ~ 2610721 (-)
CI01000009_02654102_02655554 CASK coding upstream 236887 2654102 ~ 2656438 (-)
CI01000009_02682050_02707583 NA coding upstream 264393 2681608 ~ 2707623 (-)
CI01000009_02786421_02791586 NA coding upstream 369096 2786311 ~ 2792435 (-)
G52330 NA non-coding downstream 1776 2401035 ~ 2401380 (-)
G52328 NA non-coding downstream 2262 2399814 ~ 2400894 (-)
G52371 NA non-coding downstream 14617 2388314 ~ 2388539 (-)
G52342 NA non-coding downstream 187621 2214952 ~ 2215535 (-)
G52338 NA non-coding downstream 245410 2157412 ~ 2157746 (-)
G52378 NA non-coding upstream 10034 2427249 ~ 2427848 (-)
G52379 NA non-coding upstream 31151 2448366 ~ 2451640 (-)
G52440 NA non-coding upstream 95742 2512957 ~ 2513671 (-)
G52409 NA non-coding upstream 146547 2563762 ~ 2566564 (-)
G52406 NA non-coding upstream 157271 2574486 ~ 2578978 (-)
G52098 NA other downstream 995529 1401932 ~ 1407627 (-)
G52410 NA other upstream 134509 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 466473 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 843988 3261038 ~ 3262843 (-)
G52828 NA other upstream 1800205 4217420 ~ 4231469 (-)
G53515 NA other upstream 3085180 5502395 ~ 5505248 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037965 fam160a2 coding NC_007120.7 CM002893.2 32895003 ~ 32912638 (-)