LOC103040939 (LOC108414593)


Basic Information

Item Value
gene id LOC103040939
gene name LOC108414593
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 39052496 ~ 39152430 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685091.1
GGGGAAGGCGGACAGTCAGCGTGGCGGCTGCGGCTGCGCCTGCGAGCTAAAGGTgtcctcagtgtttctctgtgtgtgttgaggCTGACCGTCCGTCACCATGCGGAAGTGTAAGAACTGCGGAGGGACGAATATTGATGTGGATCAGACACGTGGAGATGCCGTGTGTATGGGCTGCGGCTCCGTGTTGGAGGACAACATCATAGTTTCTGAGGTAACCTTCGTGGAGAACAGCGGCGGGGGATCGTCTGCTGTCGGACAGTTCGTGGCATCAGACGCTAGTGGAAATGCCCCTTCTTTGGGAGGCAACTTTACTGGGATGGGAAAGGAGTCCAGAGCCCAGACGCTACAGAATGccaAGCGGAACATAAACCACCTGGGTCACCAGCTGCAGATGAACCAGCACTGCTTAAACACGGCCTTCAACTTCTACAAGATGGCGCTGTGCAAGCGGCTGACCCGAGGACGCAAATCTGCCCACGTCATCGCAGCCTGCCTGTACCTGGTGTGCAGGACGGAGGGGACACCTCACATGCTGTTGGACCTGAGTGATCTACTGCAGGTGAATGTGTATGTCCTGGGAAGAACCTTCTTGGCACTGGCAAAAGAGCTGTGCATCAATGCTCCAGCCATAGatcCCTGTCTGTACGTCCCGCGCTTTGCGCAAATGTTGGAGTTCGGAGAGAAGAGTCACGAGGTGTCCATGACTGCGCTGAGGCTCGTGCAGAGGATGAAGAGGGACTGGATGCACACGGGACGAAGACCCTCGGGCCTCTGCGGTGCAGCCCTGCTGGTCGCTGCTCGCATGCATGAGTTTCATCGAACTATCAAAGATGTGATCGGAGTGGTGAAAGTGTGTGAGGCCACACTGAGGAAGAGGCTAAGTGAGTTTGAGGACACGCCCACCAGTGAACTGACCATTGAAGAGTTTATGAGGGTGGATCTAGACCAGGAGTGTGACCCACCCTCTTTTAAAGATGGACTGAGGAGGATCAGACTGCAAAAGATCGAGGAGGAGCTGGCAAAGAAAATAGACGAGGTTCAAGGTGAAATCTGTGGCTATCAGGATGAAATTGAGATGGAGCTGGAGAGCAACAGGCCCAAAGCCAGTGGGATTTACGCAGCTTATTCGAAAAATgATGATGCAGTGTCCTTGATGTCGTCCATCTGCACCGACATTGATGAGGAGTGTGATGATGAAGAGTTGCGGGCTGTTGCGTCTCACCTGAACAACAGCTCCTGCAGCAACGGGAAGCCAACGGGCGAAGAAGACGAGGAACGACAGGATGGGCGAGACACACCGCTCAAGCGCCCCTCTCTAGAGGTCCTGTTGGGGCCGCTGCCCACTGCGGCCAGCCTGGGCCTCTCTGAATCCATCAACAAGTGTGTTGGAGAGGAGAAGGAGAATGAACATGATGATGCATCAGTAAATGGTGAACTGGATCTGAGCGGGATCGATGATGAGGAAATTGATCGGTACATCCTGAACGACAAGGAGGTGCAGATTAAAACCGAGCTGTGGTTGCTGGAGAATGCAGACTACCTCAAAGAACAGAAAGAAAAGGAGGAAAGGATAGCTAAGGAGAAGGAGCTTGGTATCTACAAGGAAAAGAagTCGCGGAAACCACCGCAGAAACGGCAGCCGATCAACGCCAGCACGGCGGACGAGGCGATTGAGAAGATGCTGGAGCAGAAGCGCATCTCCTCTAAAATCAACTATGACGTCCTGAAGGACCTGAACAAGTCTGCCCCGAAGAGCCCCTCCACCGAGCCCAAAGAGTCTCCGGCCCAGGGAAACACCCGGAGACCCCCGGCTCGCCCACGCAAACCCGCCGACCCCTTAGCCGGCCTGCCCTTGCCTGCAAGCACCATCGGAAAGAGGATACGACCACTCATTTCTGCACAACCCTCTAAGAAACAGGCCCTGGATCAGTCAGTGTTGGGGACCCCAGTGTCAGTGCCTGCAGCCCCTGCCCAGAATGCCGTGCTGGTGGAGAGTGGGCCGGTGGCGTATGAGGATGTAGGGGAAGAAgacgaggaggaagaggaggagcctTGTGTTAGTGCTATGCAGATGATGGGTGGCAACGactACGGCTACGACTTTGATGACGATGACGGGTTCTAGCTCGGCTCTGTGTGAAGAAGGGGAATGCTAAAACAGAGAATACTGCTGGCACACAGCCAAACTCACTATACtccttgctgctgctgctgacttaTACTTGAAGAAACCTTagtttacacacactcacagaacaCAGTGCCAGGGAATTCAGGGACTGATGCTGGATTGTGCTTAACCACCTTTAAATTAGAGTCACGCTctgtgaatgtgtctgtgagtaagagtgtgtgcatgtgtctgtgtgtgtgttatgtgagagcgagagggagaggATAAAGTTAATGTGCAGTAATGCTGGGGATAATCTCTTTTCGTCCTCGTCTGGCATTCATCATCCACACAGACACAACAGTTAATTAGGATATATCTGCTCATCATTAAAAGCTCTGTTTCACTGTTAGCCATCAAGTTGCACAGTTTACTCGATTACTGCtgccacttttgaagctccacagttgaCTGACATGGCGATCCACCAACcacaatttatttatgtatttatttatttattttcgttAACACACAATCAGAAACAGTAGTATGCAATAGTCGGTAGGTCACAGTCTTTACCACCCACATTTAGACAAAGATTTTACACAATCTAGTGTATGTATAATTTGACCCGGGTTGGTTAGATACCATATGGTGCTGATTTTCTGAATGAAAATGACATATATTATACAGAGGCTTCACTTCAGGACAaatgtatgcacacacacacacacacacatacacactgtagGGCATAATAATAAGGTCATATTTGACAGACATAAATCATAAAGCTGCtgcattcatttacatttaattacaccTGTATCcacagcctgtgtgtgtgtttgtacacacttaaatgcattaaatgcacTGAGGGGtttgttgtatgtgtgtgtgtgtgtgtgtatgtagcctAAATTGAGGCTGACATCTctgggaggtgtgtgtgtgtgtgtgtgtatgtgtattcaCTAACTACATTAGAGTGAGACATGGCCTAATCCATACAGGTCCATGTACCATACATCTAAACACATTAGACCCTCCCCCtctgaggttgtgtgtgtgtgtgtgtgtgtatgcgtgtgtgtgttttgtgtgtgtgtgtgtgtatgcgtgtgagtgtgtgagaaagCCAACAGCGGTGAAATCATTTCAAAAGCCAAAGTGTCATTATTAGAAGGCcttactgtgtatatatagatgaatcatattaatgttaaatatctgctgctctgctcatgaacagtaccagtcaaa

Function

NR:

description
PREDICTED: transcription factor IIIB 90 kDa subunit-like

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006413 translational initiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15196 BRF1, GTF3B; transcription factor IIIB 90 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685091.1 True 3385 mRNA 0.50 19 39052496 39152430

Neighbor

gene id symbol gene type direction distance location
dcdc2b dcdc2b coding upstream 79387 38941253 ~ 38973109 (+)
iqcc NA coding upstream 112231 38932675 ~ 38940265 (+)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding upstream 121737 38917631 ~ 38930759 (+)
tmem39b tmem39b,LOC107675583 coding upstream 136525 38907566 ~ 38915971 (+)
ndufaf1 ndufaf1 coding upstream 163957 38885274 ~ 38888539 (+)
LOC103047800 NA coding downstream 182851 39335281 ~ 39371359 (+)
LOC111196043 NA coding downstream 221552 39373982 ~ 39376638 (+)
gphb5 NA coding downstream 425342 39577772 ~ 39583218 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding downstream 933655 40086085 ~ 40110675 (+)
eif3l eif3l,LOC102789421 coding downstream 1045958 40198388 ~ 40207129 (+)
G222454 NA non-coding upstream 159165 38890734 ~ 38893331 (+)
G222449 NA non-coding upstream 193360 38858772 ~ 38859136 (+)
G222447 NA non-coding upstream 205202 38846577 ~ 38847294 (+)
G222442 NA non-coding upstream 227417 38822740 ~ 38825079 (+)
G222436 NA non-coding upstream 254077 38798089 ~ 38798419 (+)
G222589 NA non-coding downstream 9057 39161487 ~ 39161688 (+)
G222595 NA non-coding downstream 21752 39174182 ~ 39174576 (+)
G222603 NA non-coding downstream 118832 39271262 ~ 39271357 (+)
G222601 NA non-coding downstream 122108 39274538 ~ 39274832 (+)
G222631 NA non-coding downstream 205244 39357674 ~ 39359817 (+)
oip5 NA other upstream 153663 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 308312 38735939 ~ 38744184 (+)
slc38a6 NA other upstream 2033194 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 2061012 36976406 ~ 36991484 (+)
G221878 NA other upstream 2643455 36403148 ~ 36409041 (+)
LOC103047486 LOC108443507 other downstream 45277 39197707 ~ 39271138 (+)
G222694 ppp2r5e,LOC102786035 other downstream 526072 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 1178643 40331073 ~ 40339652 (+)
LOC103047655 NA other downstream 1197377 40349807 ~ 40352656 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 1913228 41065658 ~ 41073316 (+)

Expression


Co-expression Network