LOC103047800


Basic Information

Item Value
gene id LOC103047800
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 39335281 ~ 39371359 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685097.1
GCAGGCGCGCGCGGACACGCTCACACGCACGCAGCTCTGCTGACCCGCCCGCAGCTGTTTCTCTCCGCGATAGATTTCTCCTGGACATCAGCAGGCCTGTGATGGTTGGTGCCTTTGGggattttgcctgatttctgtTCCCCACCATGAACTCCTCTCCTGGCCCTGCTGCCGTCCCCTCACCCCCCGTCCTTCAGGTAGCCAGGGCGCCGGAGCGGGAcgacccccacacacactttcctGCCCTGTACTCCTCCTCCCTGGCTGTGGAGCGAGGGGCTGTTTGCATCCCGTCTCCGTTTGCCGACACTGAGTTTGGACCCGGACCGCTGAACCTCGGACACCCCGTCTCAGAAAGCCCCGGGCTAGGACCCCCCCTCAGCCCCTCGCTGTTCTGgccctcacacaccacacacgccATCACCCTGCACTGCCCACCACAGCTGATGTACggagaaccacacacacacgcagcctGGGCAGAGAccaaaccacacacacccaGCCGCAGCagTTCTTTAGTACCTCATATGAAGTTGTTTGGGAAGCAGCTGGAGGACTCTGATAAAGTCCTGAACTCCTCTTCCTCGGAAACTCTGGCTAAAGCTGACCTGCATTACTGCGTGGTGTGCAGTGACTACGCCTCAGGCTATCACTATGGCGTGTGGTCTTGCGAGGGCTGCAAGGCGTTCTTTAAGAGAAGCATTCAAGGACACAATGACTACATCTGTCCAGCCACCAATCAGTGCACAATCGACAAAAACCGCCGCAAGAGCTGCCAGGCCTGCCGGCTACGCAAGTGCTACGAAGTAGGAATGATGAAGTGCGGTGTAAGAAGGGAGCGGTGTAGTTATCGTGGTGCTCGTCACCGCCGGGTTCCGCAGGTCCGGGAAAGCTCTGGAGTGGTCATGGGGGTCAGAGGTCATTCTCAGCAACATCCGCAGCTTCACcaacccctctctctccccgCCCCTGAGTTAAGAGCGCCCGGTCTCTCCCCCGAGCAGCTGGTTCAGTGCATGCTGGACGCAGAGCCTCCAGACATCTACCTGAAACAGGAAATGAAGAAGCCCTACACGGAGGCCAGTGTGATGATGTCACTCACAAACCTCGCAGACAAAGAGCTCGTCGTTATGATCAGCTGGGCCAAGAAGATACCAGGATTTGTGGAGCTGAACCTGTCCCTGCAGGTGCAGCTGCTGGAGTGCTGCTGGTTGGAGGTGTTGATGCTGGGTCTCATGTGGAGGTCTGTAGATCATCCGGGAAATCTCATCTTCTGCCCAGACCTCATACTTAGCAGGTACATGAGTGTGTATGTGCAAATCCTGCTTTCTTTATGAAGGTGCTGATAAGAAAAAGAGCGCCACCAAAAGGTCATAAGTAACAGTGTTTGAACCGTTTGAGTGTTTTTAGAAGGTAGAACTGAAATCGGGTATATCAAAGGTAAAGAAGTAGTTTTGGTGGACCtccaccttactctacctcactctgctttctTATACCACATTCTACCTCCCTCTTCCTTCTTCTACCTCACTTTTCCTTCTTCTAAcacattctacctcactctactttctTATACCACACCTCACTCTGCcttttctacctcactctttcttcttctacctcactctatgtCACGCTTCCTTCTTTTAACTCACTCTTCCTTCTTCTAccacattctacctcactctgctttcttgtacctcactcttccttctTCCTTCTTATACCACATTCTACCTTACACTGACATCTTCTACCTCACTCCTCCAtcgtctacctcactctacctcactcttcatTCTTTTACCTCAGTCTACCTTGCTGTGCCTCACTATACCTtcttttacctcactctgccttccCCTACCATACTCTATCACACTCTTAATCACAGTTCCTCACTCTGCCTTCCTCTATTGTTATTGTAGctctttcaatgtgttttttttttattaatattgtgaaaaagtattaaaatatgaTTATCTTAAAGCCCTACTCATAAACTCCTGTTTGTTCAGTATAGTGTGTTTCATTTAGATGGAATCTATCATTGAGGACAAAATCTGTGCCCCATAACAAGTAAAACTCTATAATACAGTTTTTCAGCCCATTATGACAACTATTGAAAATCCCAAAATGTTGAAGTATCtcaattttttcttttgaaatttTGTATCCGTTTCCTACAAAAACAGTATCGGTTTGGAATTATTAGTTCAGATTT
>XM_022685098.1
CACGCTCACACGCACGCAGCTCTGCTGACCCGCCCGCAGCTGTTTCTCTCCGCGATTTCTCCTGGACATCAGCAGGCCTGTGATGGTTGGTGCCTTTGGggattttgcctgatttctgtTCCCCACCATGAACTCCTCTCCTGGCCCTGCTGCCGTCCCCTCACCCCCCGTCCTTCAGGTAGCCAGGGCGCCGGAGCGGGAcgacccccacacacactttcctGCCCTGTACTCCTCCTCCCTGGCTGTGGAGCGAGGGGCTGTTTGCATCCCGTCTCCGTTTGCCGACACTGAGTTTGGACCCGGACCGCTGAACCTCGGACACCCCGTCTCAGAAAGCCCCGGGCTAGGACCCCCCCTCAGCCCCTCGCTGTTCTGgccctcacacaccacacacgccATCACCCTGCACTGCCCACCACAGCTGATGTACggagaaccacacacacacgcagcctGGGCAGAGAccaaaccacacacacccaGCCGCAGCagTTCTTTAGTACCTCATATGAAGTTGTTTGGGAAGCAGCTGGAGGACTCTGATAAAGTCCTGAACTCCTCTTCCTCGGAAACTCTGGCTAAAGCTGACCTGCATTACTGCGTGGTGTGCAGTGACTACGCCTCAGGCTATCACTATGGCGTGTGGTCTTGCGAGGGCTGCAAGGCGTTCTTTAAGAGAAGCATTCAAGGACACAATGACTACATCTGTCCAGCCACCAATCAGTGCACAATCGACAAAAACCGCCGCAAGAGCTGCCAGGCCTGCCGGCTACGCAAGTGCTACGAAGTAGGAATGATGAAGTGCGGTGTAAGAAGGGAGCGGTGTAGTTATCGTGGTGCTCGTCACCGCCGGGTTCCGCAGGTCCGGGAAAGCTCTGGAGTGGTCATGGGGGTCAGAGGTCATTCTCAGCAACATCCGCAGCTTCACcaacccctctctctccccgCCCCTGAGTTAAGAGCGCCCGGTCTCTCCCCCGAGCAGCTGGTTCAGTGCATGCTGGACGCAGAGCCTCCAGACATCTACCTGAAACAGGAAATGAAGAAGCCCTACACGGAGGCCAGTGTGATGATGTCACTCACAAACCTCGCAGACAAAGAGCTCGTCGTTATGATCAGCTGGGCCAAGAAGATACCAGGATTTGTGGAGCTGAACCTGTCCCTGCAGGTGCAGCTGCTGGAGTGCTGCTGGTTGGAGGTGTTGATGCTGGGTCTCATGTGGAGGTCTGTAGATCATCCGGGAAATCTCATCTTCTGCCCAGACCTCATACTTAGCAGGTACATGAGTGTGTATGTGCAAATCCTGCTTTCTTTATGAAGGTGCTGATAAGAAAAAGAGCGCCACCAAAAGGTCATAAGTAACAGTGTTTGAACCGTTTGAGTGTTTTTAGAAGGTAGAACTGAAATCGGGTATATCAAAGGTAAAGAAGTAGTTTTGGTGGACCtccaccttactctacctcactctgctttctTATACCACATTCTACCTCCCTCTTCCTTCTTCTACCTCACTTTTCCTTCTTCTAAcacattctacctcactctactttctTATACCACACCTCACTCTGCcttttctacctcactctttcttcttctacctcactctatgtCACGCTTCCTTCTTTTAACTCACTCTTCCTTCTTCTAccacattctacctcactctgctttcttgtacctcactcttccttctTCCTTCTTATACCACATTCTACCTTACACTGACATCTTCTACCTCACTCCTCCAtcgtctacctcactctacctcactcttcatTCTTTTACCTCAGTCTACCTTGCTGTGCCTCACTATACCTtcttttacctcactctgccttccCCTACCATACTCTATCACACTCTTAATCACAGTTCCTCACTCTGCCTTCCTCTATTGTTATTGTAGctctttcaatgtgttttttttttattaatattgtgaaaaagtattaaaatatgaTTATCTTAAAGCCCTACTCATAAACTCCTGTTTGTTCAGTATAGTGTGTTTCATTTAGATGGAATCTATCATTGAGGACAAAATCTGTGCCCCATAACAAGTAAAACTCTATAATACAGTTTTTCAGCCCATTATGACAACTATTGAAAATCCCAAAATGTTGAAGTATCtcaattttttcttttgaaatttTGTATCCGTTTCCTACAAAAACAGTATCGGTTTGGAATTATTAGTTCAGATTTGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685097.1 True 2233 mRNA 0.50 6 39335281 39371357
XM_022685098.1 False 2216 mRNA 0.49 6 39335296 39371359

Neighbor

gene id symbol gene type direction distance location
LOC103040939 LOC108414593 coding upstream 182851 39052496 ~ 39152430 (+)
dcdc2b dcdc2b coding upstream 362172 38941253 ~ 38973109 (+)
iqcc NA coding upstream 395016 38932675 ~ 38940265 (+)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding upstream 404522 38917631 ~ 38930759 (+)
tmem39b tmem39b,LOC107675583 coding upstream 419310 38907566 ~ 38915971 (+)
LOC111196043 NA coding downstream 2623 39373982 ~ 39376638 (+)
gphb5 NA coding downstream 206413 39577772 ~ 39583218 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding downstream 714726 40086085 ~ 40110675 (+)
eif3l eif3l,LOC102789421 coding downstream 827029 40198388 ~ 40207129 (+)
LOC103047342 NA coding downstream 837047 40208406 ~ 40217036 (+)
G222601 NA non-coding upstream 60449 39274538 ~ 39274832 (+)
G222603 NA non-coding upstream 63924 39271262 ~ 39271357 (+)
G222595 NA non-coding upstream 160705 39174182 ~ 39174576 (+)
G222589 NA non-coding upstream 173593 39161487 ~ 39161688 (+)
G222465 NA non-coding upstream 276371 38978249 ~ 39058910 (+)
G222632 NA non-coding downstream 288 39371647 ~ 39408437 (+)
G222695 NA non-coding downstream 350199 39721558 ~ 39724437 (+)
G222708 NA non-coding downstream 367718 39739077 ~ 39763389 (+)
G222715 syt16,LOC107683639 non-coding downstream 385081 39756440 ~ 39761263 (+)
G222734 NA non-coding downstream 431886 39803245 ~ 39805802 (+)
LOC103047486 LOC108443507 other upstream 64143 39197707 ~ 39271138 (+)
oip5 NA other upstream 436448 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 591097 38735939 ~ 38744184 (+)
slc38a6 NA other upstream 2315979 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 2343797 36976406 ~ 36991484 (+)
G222694 ppp2r5e,LOC102786035 other downstream 307143 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 959714 40331073 ~ 40339652 (+)
LOC103047655 NA other downstream 978448 40349807 ~ 40352656 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 1694299 41065658 ~ 41073316 (+)
LOC103046574 NA other downstream 1813602 41184961 ~ 41193209 (+)

Expression


Co-expression Network