LOC111196043


Basic Information

Item Value
gene id LOC111196043
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 39373982 ~ 39376638 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685099.1
tggtattgatgtataaaaagcaaattaatgttttatattttactgttgttAACATGCTCAGTTGACTCGTCCATAGATTGTTACAATAGGGCTCATAGTGTATTTTGCCACTGACTGACTCTCATTCAGATAAGCCAGGAATGGGACACAATATAGAGCAGCCAATTACAATCAAGACCATTCACTTGTATAAGTCTTAAAGGTACAGTAACAAAActtatttttataatgtaaggGAAAATGCTGAAAGTATTTCATGCTCAGTGATGTCGGGAATCGTTTAAGTCACAACTCAGTCAGTTCGTGCTGCATTGATGTGTCTGATTTTGTTATGGAACAAATCTAAGGCCATTTTCTGTACACAGATGCATATGGTCatatgatagtgtgtgtgtgtgtgtttgtgtgttctgcAGATATGACGTCCCCGGAGTCAGATTCGGAGTTGGAGGGCAGGTCTAAGCTGCTGCACCTGCTGGACACAATGACGAACGCTCTGGTCTGGGCCATCTCCAGAACAGGCCTGTCCACACAGCAGCAGTCTGCCCGTCTCGCACACCTGCTAATGCTTCTGTCACACATACGCCATCTCAgcAACAAAGGTATGGAGCATCTTTCCAGTATGAAGAGGAAGAACGTGGTTCTGCTGTACGATCTGATGCTGGAGATGCTGGATGCTAACACACCTAGCAGGAGCCGTATATCCGGCGCCCAGTGCACGAGCCCCGGACACGCCCCTCCAATagacacacccccacacacaaacCCAGCCTCTGAGAACCAGAGTCCAGTGGCCCATCAGCTCGTTCAGAACGTGGAGGAACAGAACGGCCACGAGTGACACGTCCAACATCTCAGACCTGACGCACAAAGGAGTACGAACACGTATCTCCACCAGACGAGGCTACTGATAAAAACACGATGTAAATCAGCTTTGCACTGTTTTCCtattttattacacttttaTAACATCCACATCAGTTTCACCCCTTTAGTGCAACCCAATCCTAATGCAGGAACTGAGATTGGCAACgtcatataattaaaataaatctgtattaTCATTTCACAGTTATTTTAGACAATTTCTATAGAAATTCACACATTTCTATAGACATTTGTGGATTGCTTCAGAATTTCAGGAATTCTGGTGCTGAACAGGTTCTAGTTAGTGACTCTAGAAAAACATGGACCCCATGGTTCCATTGCTTTCCATTCTATATGAATGAAGCCaaaagtttttaat

Function

GO:

id name namespace
GO:0008406 gonad development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0005496 steroid binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0042562 hormone binding molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685099.1 True 1246 mRNA 0.43 2 39373982 39376638

Neighbor

gene id symbol gene type direction distance location
LOC103047800 NA coding upstream 2623 39335281 ~ 39371359 (+)
LOC103040939 LOC108414593 coding upstream 221552 39052496 ~ 39152430 (+)
dcdc2b dcdc2b coding upstream 400873 38941253 ~ 38973109 (+)
iqcc NA coding upstream 433717 38932675 ~ 38940265 (+)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding upstream 443223 38917631 ~ 38930759 (+)
gphb5 NA coding downstream 201134 39577772 ~ 39583218 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding downstream 709447 40086085 ~ 40110675 (+)
eif3l eif3l,LOC102789421 coding downstream 821750 40198388 ~ 40207129 (+)
LOC103047342 NA coding downstream 831768 40208406 ~ 40217036 (+)
LOC103045354 fndc5,LOC108237574,LOC107575402,LOC108238726,LOC106589070,LOC102792536 coding downstream 1609536 40986174 ~ 41008038 (+)
G222631 NA non-coding upstream 14165 39357674 ~ 39359817 (+)
G222601 NA non-coding upstream 99150 39274538 ~ 39274832 (+)
G222603 NA non-coding upstream 102625 39271262 ~ 39271357 (+)
G222595 NA non-coding upstream 199406 39174182 ~ 39174576 (+)
G222589 NA non-coding upstream 212294 39161487 ~ 39161688 (+)
G222695 NA non-coding downstream 344920 39721558 ~ 39724437 (+)
G222708 NA non-coding downstream 362439 39739077 ~ 39763389 (+)
G222715 syt16,LOC107683639 non-coding downstream 379802 39756440 ~ 39761263 (+)
G222734 NA non-coding downstream 426607 39803245 ~ 39805802 (+)
G222731 NA non-coding downstream 429257 39805895 ~ 39808427 (+)
LOC103047486 LOC108443507 other upstream 102844 39197707 ~ 39271138 (+)
oip5 NA other upstream 475149 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 629798 38735939 ~ 38744184 (+)
slc38a6 NA other upstream 2354680 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 2382498 36976406 ~ 36991484 (+)
G222694 ppp2r5e,LOC102786035 other downstream 301864 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 954435 40331073 ~ 40339652 (+)
LOC103047655 NA other downstream 973169 40349807 ~ 40352656 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 1689020 41065658 ~ 41073316 (+)
LOC103046574 NA other downstream 1808323 41184961 ~ 41193209 (+)

Expression


Co-expression Network