gphb5


Basic Information

Item Value
gene id gphb5
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 39577772 ~ 39583218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685102.1
TCAAGTTAGTCACAGCAACCTGATTTAACATAAGGATTTTGGGTTTGAGGAAGTTCATTCAGGTTCTCCTTTCTGATAGATGCTAACAGATGATATTTTTAGGCTTTATCTTGCAATAATAGATCCTAGAAAacagaagaagtagaagaagaagaagaagaagaagaggaagaagaggaggagggagaaCCTTCAGAGAAAAACCAGCTGGTGGACTGAGTGACCATCAAGAACGTTGAGTGCTCTGATCTTTTCTAGTTTCTACTTTAAACCAAGGTATCAATGGCCTACCAGAGGTGCCCAGTACCACGtttttctccacTCACTCTGGGCTGGGTGGTGTTATCTGTCTGGCTGTGTGTCGGTGGGCCGGCTGGTGTGTCTGGGGTGAATCTGAGAAAGTTTATTGGCTGTGCTGTGAGAGAGTTCGCCTTCATTGCCCGGAAGCCTGGCTGTGGAGCCCTGCCCGTCACCACAGATGCCTGCTGGGGGCGCTGCGAGACCTGGGAGAGGCCTGTTCTGGACCCGCCCTTCATCGAGTCCTACCAGAGGGTGTGCACCTACAACCAGACGCAGTTCATGACCGTCCAGCTGCCCAACTGCTCGGCCGGCGTGGATCCCCACTACACTTACCCAGTGGCTCTCAAGTGTaactgtggagtgtgtgtgaccAGCACTACGGAGTGTATCGCCTCTTACTGAGAACTACTGGTCACATCCAGAAAAcaaattcttcttcttcatttcaGCCTTTTAATGTAGATAGTCAGTAGCTGAACATCTCATTTACACTTACAACTTTATGTTTCTAACAATgtatctgatctgatctgtttATGTAGCTGATCTGTCAAGGCGGGGTTGAGTTTTGTAGTTTGCTTTGGATCTACAAAGCTAATGTTACTAATGGAAGCTAATTTACCACATACTTTGACCTTTTTAACTATATGTTAGCATGTGCATTGATTACTTTGTGAGATGggtatacagctctaaaaacaaataagagaccacttaaaaatgtttagtttgtttgattttaccaaattaaaaatctct

Function

NR:

description
PREDICTED: glycoprotein hormone beta-5

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685102.1 True 1059 mRNA 0.45 3 39577772 39583218

Neighbor

gene id symbol gene type direction distance location
LOC111196043 NA coding upstream 201134 39373982 ~ 39376638 (+)
LOC103047800 NA coding upstream 206413 39335281 ~ 39371359 (+)
LOC103040939 LOC108414593 coding upstream 425342 39052496 ~ 39152430 (+)
dcdc2b dcdc2b coding upstream 604663 38941253 ~ 38973109 (+)
iqcc NA coding upstream 637507 38932675 ~ 38940265 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding downstream 502867 40086085 ~ 40110675 (+)
eif3l eif3l,LOC102789421 coding downstream 615170 40198388 ~ 40207129 (+)
LOC103047342 NA coding downstream 625188 40208406 ~ 40217036 (+)
LOC103045354 fndc5,LOC108237574,LOC107575402,LOC108238726,LOC106589070,LOC102792536 coding downstream 1402956 40986174 ~ 41008038 (+)
LOC111196049 NA coding downstream 1506284 41089502 ~ 41098828 (+)
G222632 NA non-coding upstream 169335 39371647 ~ 39408437 (+)
G222631 NA non-coding upstream 217955 39357674 ~ 39359817 (+)
G222601 NA non-coding upstream 302940 39274538 ~ 39274832 (+)
G222603 NA non-coding upstream 306415 39271262 ~ 39271357 (+)
G222595 NA non-coding upstream 403196 39174182 ~ 39174576 (+)
G222695 NA non-coding downstream 138340 39721558 ~ 39724437 (+)
G222708 NA non-coding downstream 155859 39739077 ~ 39763389 (+)
G222715 syt16,LOC107683639 non-coding downstream 173222 39756440 ~ 39761263 (+)
G222734 NA non-coding downstream 220027 39803245 ~ 39805802 (+)
G222731 NA non-coding downstream 222677 39805895 ~ 39808427 (+)
LOC103047486 LOC108443507 other upstream 306634 39197707 ~ 39271138 (+)
oip5 NA other upstream 678939 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 833588 38735939 ~ 38744184 (+)
slc38a6 NA other upstream 2558470 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 2586288 36976406 ~ 36991484 (+)
G222694 ppp2r5e,LOC102786035 other downstream 95284 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 747855 40331073 ~ 40339652 (+)
LOC103047655 NA other downstream 766589 40349807 ~ 40352656 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 1482440 41065658 ~ 41073316 (+)
LOC103046574 NA other downstream 1601743 41184961 ~ 41193209 (+)

Expression


Co-expression Network