LOC111196049


Basic Information

Item Value
gene id LOC111196049
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 41089502 ~ 41098828 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685156.1
aTAATAGCTTgtaaaatatctggcccgcagccaaacttatttgccgacccctggtctaGACAAACCAAGGTAAGTAAAGTGGTCAAGGGTCGGGTCACGGCAAGGATAATCAAAGGCAGGGCAAAACTCCTGCAGTCggtaaacaaaaacaggatcataCACAAAGAAACCAACAATAGAACGTGTTTTAATGTAGGGATAGCCTAAACAATTCTTGAAAATACAACACACAAAGAACAGGTAGAATGAAACTGGTACATTCTGGTACATTCCAGGTGTTTTAGACAAAGAATAAAGGTGAATGAGGTTTGACTGCAATTCTGTTGGGTTGATGATGTGTGAATAAGCAGATGAAGACTGAGTTTGCCtttctgatatctccatgttctCAGTAGCTTTTGTATCAGCACCAATAACACAACATCGGTTGCTCAGGGAACCAGCAAAAGCCAGCTAAATCTTTGGGACTGCTGCTTTGAGAAAGTGTTACTAAACATGACTATTACAATATgagaaaaataatgagtttatattgATTGCAGAACATGCAGCCTGTGTCTTCAatccattgaaaaaaaaattacattgacaTTAGAAAGtactaaaacaaacatttaacaaaCTTAAACAGGCAGCACTGTGTACATAGCAAAAACTCACCCCCACATCCCCCACATGAACAAAGAAcggtataaaatgtacaaaatgtaacaataaaGTGAAAAATCATGGTGATccatatttataataatgtgtttattgagATTAGATGTTAAAAATGTGCACAGGCAGTTtcggaaatgcatgaattccagtgAGGTACAACTTTGGGTCCTAGGGTACAAAATCCTAACCCTAAGGAACAATAAGTAAGGGTACACATTTGTTCCTATAAGTAAACTATAAAGTAAACTGTCTGTAACTGTCTATCTGTAACCTTCATGTTTTCCACTGATATTCATTTTTCAATTTGTTCCTCTATCCTACCTATAGTTTCATGCTTGTCCGTCGACTTCCTTAAGTTACTGTGTGTattaaccatgttttttaacttaatttttgatttctttgcatgggcaagactatgcccctatcgctagcattgtaagcctgttgggagcatctgctaaaagtgctgtatttcagaaggATGGGGTGAACGAAGGTGGGCTATTCTACAAAAGCTCATACGTAATCTTTATCATGTTTCAATACACCgcaccggatttctcctttaaagtgaAAAGCAACACTATAACCACTGTGAGCAGCACCTTCCTTAGCCCCGCCCAGTCCGTCTTACCTGTTGCAGGTGCAGCTGGGGCTGAATGTTGAGTGGATGGACAGAGGAGGGGCtgtagaggaggaggaggagggagtgaggagaggaggctttaaaggGAGCAGTGGGATCTAAACAAGCATCAAGAACCGCCGCTCTCCCTCCAGCAGGACGCAGGAGAATGTTCCGAGGTTTagacagacagtgagacagccatacagacagacaaacagacagacatggGTCGCTACACGGGTAAGACCTGCCGCCTGATCTTCATGCTGGTGATCACCGTGGTGTTCTTCGTGGCGGAGATCGTGGCGGGCTACGCGGGGAACTCCATCGCGCTGGTCTCGGACTCCTTCAACATGCTGTCCGACATGGTGTCGCTGTGCGTGGGCTTGATGTCCGCCCGCCTGTCGCGCCGCAGCGGCTCGGAGCGCTGCTCCTACGGCCTGGGCCGGGTGGAGGTGGTGGGCGCGCTCTCCAACGCCGTGTTCCTGACCGCCCTCCTCTTCTCCATCTCCGCCGAGGCCGTCAAGCGCCTCAGCCGGCCCGAGCCCATCGACGACCCGTTACTGGTGCTGGTGGTCGGCTCGCTGGGGCTGGCGGTCAACGTGGTGGGGCTCGTCATCTTCCAGGACTGCCGGTGGCTGTGCGGGAAAAACCGGCGGGGCGCGGGAGACAAGACCGAAGAGAAACCGGTCATGAACGGCGAAGCAGGGCCCCTCGCCCATGAGGCTGATTCACCGCAGAAAGATAAGAACCAGAGTGAAGGACAACCACTAAACATACGAGGAGTTTTACTCCACGTGCTGAACGATGCGCTGGGCTccgtggtggtggtggtggcctCTGTACTGTTTTATGTGTGGCCCCTACCCCCCGACGCCCCCTGCAACTGGCAGTGCTATGTGGACCCCAGCCTGACGCTGGTGATGGTGGTCATCATCCTGGCGTCGGCCATTCCTCTGATGAAGGAAACCACTACAACTCTGCTGCAGATGACCCCACCGGACATGACTGTTTCCACCATATTGGAGAAGGTACGCCGGTTGCCCGCAGTGCTCAGCGTCCACGAAGCTCACGTGTGGGAGTTAGTCAAGGACCGCAATGTAGCCACCTTGCACGTCAAAGTGAACTCAGAATTCAACAAGTTTGAACTCAAGAGCCTCCAATCCCAGATCAGGGAGGTCTTCCACAATGCTGGCGTTCACAGCGTCACAATCCAGGTGGAGATCAgcgacggggaactggacagcaGCCAGTGTAGCAACCCCTGCATGTCCAGCGACTGTCTCAAACTGTCCTGCTGCCCCACTGAGCCTACATTAGCGTCAGACAGCAGGGTGGACCAGTCCAGCATCCCCTTGGGAGAAGTGTCATTAGACTTGGGCGATGGTAATACAAATCTGCTTCGGGAACGAGACACTAAACACATAAAAGTCACAGGGAAAGTCACAGAAACCACCAAGTTTTAAACCTCGAGGGCTGGCTTCTCAGGTCAGGGCGTGGTCTATTCCTTGACTCAAAGAGTTTTGagttcctattttttttttttttcttttagccaAAGAATATGGCTGCCGTCACTCTGAGAAGCTGGCCCTGAATGCTTCAGACTGaagcaaaaacaaagcaaaagag

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K14697 SLC30A10, ZNT10; solute carrier family 30 (zinc transporter), member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685156.1 True 2929 mRNA 0.49 4 41089502 41098828

Neighbor

gene id symbol gene type direction distance location
LOC103045354 fndc5,LOC108237574,LOC107575402,LOC108238726,LOC106589070,LOC102792536 coding upstream 81464 40986174 ~ 41008038 (+)
LOC103047342 NA coding upstream 872466 40208406 ~ 40217036 (+)
eif3l eif3l,LOC102789421 coding upstream 882373 40198388 ~ 40207129 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding upstream 978827 40086085 ~ 40110675 (+)
gphb5 NA coding upstream 1506284 39577772 ~ 39583218 (+)
LOC111195996 NA coding downstream 97157 41195985 ~ 41198825 (+)
LOC103044280 NA coding downstream 178157 41276985 ~ 41279078 (+)
LOC103042542 NA coding downstream 189133 41287961 ~ 41294250 (+)
LOC103043683 NA coding downstream 1116915 42215743 ~ 42222054 (+)
LOC103047539 NA coding downstream 1612632 42711460 ~ 42721934 (+)
G223025 NA non-coding upstream 69751 41018974 ~ 41019751 (+)
G222977 NA non-coding upstream 106777 40888917 ~ 40982725 (+)
G222952 NA non-coding upstream 455392 40555173 ~ 40634110 (+)
G222959 NA non-coding upstream 466856 40622313 ~ 40622646 (+)
G222894 NA non-coding upstream 568516 40520769 ~ 40520986 (+)
G223079 NA non-coding downstream 183781 41282609 ~ 41296929 (+)
G223086 NA non-coding downstream 206154 41304982 ~ 41305256 (+)
G223090 NA non-coding downstream 342692 41441520 ~ 41443057 (+)
G223092 NA non-coding downstream 407233 41506061 ~ 41515273 (+)
G223130 NA non-coding downstream 886736 41985564 ~ 41985824 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other upstream 16186 41065658 ~ 41073316 (+)
LOC103047655 NA other upstream 736846 40349807 ~ 40352656 (+)
zfyve21 zfyve21 other upstream 749850 40331073 ~ 40339652 (+)
G222694 ppp2r5e,LOC102786035 other upstream 1375487 39678502 ~ 39714015 (+)
LOC103047486 LOC108443507 other upstream 1818364 39197707 ~ 39271138 (+)
LOC103046574 NA other downstream 86133 41184961 ~ 41193209 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other downstream 1144983 42243811 ~ 42371581 (+)
G223269 NA other downstream 2064453 43163281 ~ 43166134 (+)
G223335 micu1 other downstream 2512795 43611623 ~ 43615389 (+)
mcu mcu other downstream 2581323 43680151 ~ 43769000 (+)

Expression


Co-expression Network