LOC111196053


Basic Information

Item Value
gene id LOC111196053
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 43331517 ~ 43335986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685182.1
gaaggggGCGGGGCGATGTTCGTGAAGCTTCTCAAGCTTCTGGAAAGTTCCAGCATATAAAACGGGGGCAGCAGCGCTGTGATCACTGATTCACACCACAGACAGAGGACGGTCCGCCCGACTTTACCAGCTTTCTTCAACCTACAGCAGAAATACAGACGTTTTACGAACGCTCCAGAGGTCTGACAATGAAGACTGAGGAAAATAGCCAGACCCAGCAGGCTCGCCTCAGCGAGGGAATGCGGCTCATCTTTGACCAGGGGTCCCTCTCCTCTAGCTCCAGTAGCCACCGCAGCAGCAGCCAGGATAGTTCTTATTctagcagcaggagcaggaagTCACGAAAGTCATACGGCCGCCGCCGAGATCGCAGCAGATCtcgctcctcctcttcctcctcttcttcttcttcctcttcgtCCTCCTCTAACAGTGACTCTTCCTCAGGTAGCCGCTCACGGTCACGTTCTCACCCAAGATGCCACCGTGCTTCTGACAGGTCTCGCTGCCGACACCGGCGCCACTCTCCTCCTCGTCGCTACAGAGCCCGCTCTCGTTCCTACAGCCCATCACCAGATCGCTGGCGCCACCGTGATCGCAGGCACAGGGCCTACTCTCGCTCCCGCAGCCGCTCTCGTTCACATGAGCGCTACTACAGACGCTCATACAGGTCACGGTCACGATCCTCAAGCTGCAGTCCATCAAAAGGCAGGTTTGTGGGGCGATACCGGTGCAGATTCCCCCAGTCACCCAGAAGGAGCAGCTACAGAGACTACAGAAGCAGATCAAGGTCCCTAGAGCGTTCTGCTGTTCGGCTCAGCCAGAGAGAAAAAGTGGAACTTCTGAACATTGCTAAAGAAAATGCCTCCAAGATCTTTGGAGTGCACAACCTGGAGCTGCCTGCCAGTGTGAAGATTGTGGAGCAGCAAGACAAGACCCCAGAGAGAAATGCTAATGAACGGGTGAGAGCAGACCCCGAGCCACTGAAGAAACCAGCACAGGAAAAAGATGTGACGAATAAAGATGACAATGTCGCGAGGATCTCACCCACATGGAAACCAATTACCTTCAGCATCAATAACGCTGTCGCCAAGCCACCAAGCAGCCCGACATTCCACGTGACTGAGAGTAAGGTAACATCCAGAGCAGACAGCGTGGGGAACAGAAAGCCATACGGACAATGTAAAGTGATAAGTTGGAGGAAGACGAGAGAGGATTGCGCACAGGTGGGAATTGATGTGTACATAATTTTGTCTTGTGCTGAGATTTCTaaataaaccttta
>XM_022685184.1
aaggggGCGGGGCGATGTTCGTGAAGCTTCTCAAGCTTCTGGAAAGTTCCAGCATATAAAACGGGGGCAGCAGCGCTGTGATCACTGATTCACACCACAGACAGAGGACGGTCCGCCCGACTTTACCAGCTTTCTTCAACCTACAGCAGAAATACAGACGTTTTACGAACGCTCCAGAGGTCTGACAATGAAGACTGAGGAAAATAGCCAGACCCAGCAGGCTCGCCTCAGCGAGGGAATGCGGCTCATCTTTGACCAGGGGTCCCTCTCCTCTAGCTCCAGTAGCCACCGCAGCAGCAGCCAGGATAGTTCTTATTctagcagcaggagcaggaagTCACGAAAGTCATACGGCCGCCGCCGAGATCGCAGCAGATCtcgctcctcctcttcctcctcttcttcttcttcctcttcgtCCTCCTCTAACAGTGACTCTTCCTCAGGTAGCCGCTCACGGTCACGTTCTCACCCAAGATGCCACCGTGCTTCTGACAGGTCTCGCTGCCGACACCGGCGCCACTCTCCTCCTCGTCGCTACAGAGCCCGCTCTCGTTCCTACAGCCCATCACCAGATCGCTGGCGCCACCGTGATCGCAGGCACAGGGCCTACTCTCGCTCCCGCAGCCGCTCTCGTTCACATGAGCGCTACTACAGACGCTCATACAGGTCACGGTCACGATCCTCAAGCTGCAGTCCATCAAAAGGCAGGTTTGTGGGGCGATACCGGTGCAGATTCCCCCAGTCACCCAGAAGGAGCAGCTACAGAGACTACAGAAGCAGATCAAGGTCCCTAGAGCGTTCTGCTGTTCGGCTCAGCCAGAGAGAAAAAGTGGAACTTCTGAACATTGCTAAAGAAAATGCCTCCAAGATCTTTGGAGTGCACAACCTGGAGCTGCCTGCCAGTGTGAAGATTGTGGAGCAGCAAGACAAGACCCCAGAGAGAAATGCTAATGAACGGGTGAGAGCAGACCCCGAGCCACTGAAGAAACCAGCACAGGAAAAAGATGTGACGAATAAAGATGACAATGTCGCGAGGATCTCACCCACATGGAAACCAATTACCTTCAGCATCAATAACGCTGTCGCCAAGCCACCAAGCAGCCCGACATTCCACGTGACTGAGAGTAAGGTAACATCCAGAGCAGACAGCGTGGGGAACAGAAAGCCATACGGACAGTGGGTTCCTGTCAAGAAATCTTCTCCTAACAAACACTGATCCTCCATCAATCTGTATATAGAAGTGTTTATGgacactgtaaatactgtaaatagttTGTACATAGAGGTTTAAATAGTGGATTAGTGATCAGTTTCATTAGAGGTGTTTTCTTTCAGATGTAAAGTGATAAGTTGGAGGAAGACGAGAGAGGATTGCGCACAGGTGGGAATTGATGTGTACATAATTTTGTCTTGTGCTGAGATTTCTaaataaacctttatttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685182.1 False 1284 mRNA 0.53 6 43331517 43335981
XM_022685184.1 True 1447 mRNA 0.51 5 43331518 43335986

Neighbor

gene id symbol gene type direction distance location
LOC103043584 LOC108426108 coding upstream 20568 43300886 ~ 43310949 (+)
LOC103028407 NA coding upstream 138077 43189360 ~ 43193440 (+)
rab11fip2 rab11fip2 coding upstream 395682 42908505 ~ 42935835 (+)
fam204a fam204a coding upstream 529232 42774245 ~ 42802285 (+)
LOC103047539 NA coding upstream 609583 42711460 ~ 42721934 (+)
LOC103041531 runx3 coding downstream 144433 43480419 ~ 43569433 (+)
nolc1 nolc1,LOC102197487,LOC107717830,LOC102780538,LOC101478979,LOC102291991 coding downstream 258061 43594047 ~ 43607194 (+)
oit3 oit3,LOC107564524,LOC107754765,LOC107660216,LOC107717846 coding downstream 434948 43770934 ~ 43785138 (+)
myom2 myom2,LOC107660212,LOC107572023 coding downstream 724555 44060541 ~ 44111850 (+)
agpat5 agpat5,LOC107665182,LOC107717842 coding downstream 1615057 44951043 ~ 44964105 (+)
G223280 NA non-coding upstream 53851 43273936 ~ 43277666 (+)
G223276 NA non-coding upstream 117356 43212390 ~ 43214161 (+)
G223274 NA non-coding upstream 127748 43196068 ~ 43203769 (+)
G223245 NA non-coding upstream 317282 43013989 ~ 43014235 (+)
G223241 NA non-coding upstream 389844 42939207 ~ 42941673 (+)
G223296 syf2,LOC107667968,LOC107734269,LOC107679146 non-coding downstream 9661 43345647 ~ 43354563 (+)
G223349 NA non-coding downstream 323528 43659514 ~ 43740309 (+)
G223399 NA non-coding downstream 508049 43844035 ~ 43853206 (+)
G223407 NA non-coding downstream 572270 43908256 ~ 43908638 (+)
G223494 NA non-coding downstream 650428 43986414 ~ 43988247 (+)
G223269 NA other upstream 165383 43163281 ~ 43166134 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other upstream 959936 42243811 ~ 42371581 (+)
LOC103046574 NA other upstream 2138308 41184961 ~ 41193209 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other upstream 2258201 41065658 ~ 41073316 (+)
LOC103047655 NA other upstream 2978861 40349807 ~ 40352656 (+)
G223335 micu1 other downstream 275637 43611623 ~ 43615389 (+)
mcu mcu other downstream 344165 43680151 ~ 43769000 (+)
mcph1 mcph1 other downstream 1560191 44896177 ~ 44947346 (+)
tmem14a tmem14a,LOC108425445 other downstream 1629710 44965696 ~ 44968097 (+)
polh polh other downstream 1644416 44980402 ~ 44988010 (+)

Expression


Co-expression Network