CI01000009_02591882_02593586 (RPL8.S, RPL8)


Basic Information

Item Value
gene id CI01000009_02591882_02593586
gene name RPL8.S, RPL8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2591863 ~ 2593761 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02591882_02593586.mRNA
ATTCTCATGTTATTCCCAACCTGTGTGACGTGCTGACAGCCTCAGTTGCCATTCACTTTCATTGCAGTTTTCTCTGTATAATGTGAAAGGTGTCCAAATCAAATGACACGCTCAATGTAAATATGGCATTGAAATGTCTCATTAAATGTGTAATTGCTTGTTTATGCAGGCCGCAATGGGACGTGTGATCAGGGGACAGAGAAAAGGTGCGGGCTCCGTCTTTAAAGCCCATGTCAAGCACAGAAAAGGTGCTGCTAAACTCCGTCATATTGACTTTGCTGAACGCCATGGCTACATCAAGGGGATTGTGAAGGACATTATTCATGACCCCGGCCGTGGAGCTCCTCTTGCTAAGGTGGTGTTCCGTGACCCATACCGCTTCAAGAAGAGGACAGAACTGTTCATTGCAGCTGAAGGCATCCACACTGGGCAGTTCATCTACTGCGGCAAGAAAGCCCAGCTGAACATTGGCAATGTGCTGCCCGTTGGCACCATGCCTGAGGGTACCATTGTCTGCTGTCTGGAAGAGAAACCCGGAGACAGGGGCAAGCTCGCTCGTGCATCTGGAAACTACGCCACAGTCATCTCCCACAACCCTGAGACCAAGAAATCCAGAGTCAAGCTTCCATCTGGATCCAAGAAGGTCATCTCTTCTGCAAACAGAGCTGTTGTTGGTGTTGTTGCTGGTGGTGGTCGTATTGACAAACCCATCCTGAAGGCAGGACGTGCATACCACAAGTACAAGGCCAAGAGGAACTGCTGGCCTCGTGTCCGTGGTGTGGCCATGAATCCTGTTGAGCATCCCTTCGGTGGTGGTAACCATCAGCATATTGGCAAGCCCTCAACAATCAGGAGGGACGCGCCCGCTGGACGCAAGGTCGGTCTCATCGCTGCCCGTCGTACTGGCAGACTGCGTGGAACAAAGACTGTCCAGGACAAAGAAAACTAATGTGTATCTTCATAATAAA

Function

symbol description
rpl8 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL8 (ribosomal protein L8).

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
K02938 RP-L8e, RPL8; large subunit ribosomal protein L8e

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02591882_02593586.mRNA True 968 mRNA 0.50 5 2591863 2593761

Neighbor

gene id symbol gene type direction distance location
CI01000009_02403219_02417215 FAM160A2 coding downstream 174648 2403156 ~ 2417215 (-)
CI01000009_02391182_02393863 NA coding downstream 198000 2390445 ~ 2393863 (-)
CI01000009_02358636_02361913 HPX coding downstream 229914 2358470 ~ 2361949 (-)
CI01000009_02352214_02356619 NA coding downstream 235022 2352214 ~ 2356841 (-)
CI01000009_02327693_02335035 NA coding downstream 256828 2327693 ~ 2335035 (-)
CI01000009_02610459_02610721 NA coding upstream 16499 2610260 ~ 2610721 (-)
CI01000009_02654102_02655554 CASK coding upstream 60341 2654102 ~ 2656438 (-)
CI01000009_02682050_02707583 NA coding upstream 87847 2681608 ~ 2707623 (-)
CI01000009_02786421_02791586 NA coding upstream 192550 2786311 ~ 2792435 (-)
CI01000009_02844171_02861309 MAOB coding upstream 249250 2843011 ~ 2861309 (-)
G52406 NA non-coding downstream 12885 2574486 ~ 2578978 (-)
G52409 NA non-coding downstream 25299 2563762 ~ 2566564 (-)
G52440 NA non-coding downstream 78192 2512957 ~ 2513671 (-)
G52379 NA non-coding downstream 140223 2448366 ~ 2451640 (-)
G52378 NA non-coding downstream 164015 2427249 ~ 2427848 (-)
G52469 NA non-coding upstream 217284 2811045 ~ 2811334 (-)
G52478 NA non-coding upstream 229201 2822962 ~ 2823928 (-)
G52488 NA non-coding upstream 318544 2912305 ~ 2912542 (-)
G52489 NA non-coding upstream 319357 2913118 ~ 2913345 (-)
CI01000009_02975388_02982670 NA non-coding upstream 389834 2975388 ~ 2985391 (-)
G52410 NA other downstream 29330 2551724 ~ 2562533 (-)
G52098 NA other downstream 1184236 1401932 ~ 1407627 (-)
CI01000009_02885473_02893975 NA other upstream 289927 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 667442 3261038 ~ 3262843 (-)
G52828 NA other upstream 1623659 4217420 ~ 4231469 (-)
G53515 NA other upstream 2908634 5502395 ~ 5505248 (-)
G55814 NA other upstream 5832060 8425821 ~ 8428012 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014714 rpl8,LOC107595836,LOC107748161 coding CM030128.1 CM030128.1 28329797 ~ 28332468 (+)