LOC111195955


Basic Information

Item Value
gene id LOC111195955
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6218386 ~ 6235720 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651891.1
CATATTTTgcattaatacaataaatacattatacgCATGCCTTAAATAacaaattgtgatttttttttgcgtgTCTGGGGAATCTGATATATTCTTATCCGTGTTTTATCTCCTGCCCTTGCTGCTCTGCACTGGCAGAAGGCGTTGTATCCTTTCAGTTGGAGTCGCGTTTCTATGCGTTATGAGCAGGCTTCGGGCTGAGAGACTGCTGTGCTGCACCACTCTAAACCACTATTGCCTATTTTATGGACTGAAAGCTGCAAGTTTAAAATCTTCTCTTGTAATAAGGCCCTAGTCCCCTGGACCCTCATGGACCCAGCAGGCAGATGTCTGGATCTTCAGTTTTACCCAgGGAGTCCAAACCTGGGCATACAGAATGATGAACGACTTTGAGCACTCCTCGCTCAGCAATGCTGTTCTCTCTGCCTCTACACCCATTAGCTCCACAGCTTCTCAGctggttCCTGGTTTTTAAGCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651891.1 True 479 lncRNA 0.45 5 6218386 6235720

Neighbor

gene id symbol gene type direction distance location
LOC111195932 NA coding upstream 34210 6180250 ~ 6184176 (+)
LOC103039918 NA coding upstream 58741 6150688 ~ 6159645 (+)
LOC111195931 NA coding upstream 108120 6104774 ~ 6110266 (+)
lrpap1 lrpap1,LOC107749950,LOC107714242,LOC107551171,LOC107674255,LOC107556528 coding upstream 514537 5689706 ~ 5703849 (+)
LOC111195958 NA coding upstream 757882 5459757 ~ 5460504 (+)
LOC103039606 paip2b,LOC103039606,LOC107551309,LOC107674237,LOC108263850,LOC108426126 coding downstream 57390 6293110 ~ 6299551 (+)
LOC103039100 NA coding downstream 66996 6302716 ~ 6312607 (+)
LOC103038786 LOC103368813 coding downstream 79132 6314852 ~ 6324230 (+)
trnak-cuu_9 NA coding downstream 90265 6325985 ~ 6326057 (+)
LOC103036975 NA coding downstream 151784 6387504 ~ 6398481 (+)
G214134 NA non-coding upstream 105376 6112603 ~ 6113010 (+)
LOC111195966 NA non-coding upstream 130789 6086759 ~ 6087597 (+)
G214126 NA non-coding upstream 131885 6086241 ~ 6086501 (+)
G214125 NA non-coding upstream 148632 6069424 ~ 6069754 (+)
G214121 NA non-coding upstream 181181 6035494 ~ 6037205 (+)
G214174 NA non-coding downstream 39994 6275714 ~ 6275923 (+)
G214215 NA non-coding downstream 145224 6380944 ~ 6473744 (+)
G214227 NA non-coding downstream 233753 6469473 ~ 6470200 (+)
G214283 NA non-coding downstream 345574 6581294 ~ 6581733 (+)
G214290 NA non-coding downstream 396345 6632065 ~ 6632374 (+)
G214006 NA other upstream 696711 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 858654 5349167 ~ 5359732 (+)
G213891 NA other upstream 1044290 5173069 ~ 5174096 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other upstream 1627934 4510939 ~ 4590452 (+)
G213715 znf330 other upstream 1789424 4398585 ~ 4428962 (+)
G214175 NA other downstream 48061 6283781 ~ 6284368 (+)
LOC111196031 NA other downstream 163356 6399076 ~ 6409068 (+)
pold4 NA other downstream 1575258 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1620442 7856162 ~ 7877118 (+)
G214773 NA other downstream 1875228 8110948 ~ 8111325 (+)

Expression


Co-expression Network