LOC111195956


Basic Information

Item Value
gene id LOC111195956
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 7927113 ~ 7929165 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651892.1
AAGCGACACTCCGACGTTGTAGTTACCGCACAGCTGGCCAACATGGCTCGATTTCGTCTACAAATCGTGCCAATTTGGCGCAAATAAAATCTTAAACGAAATAACAGGAGACTGCTTAAAGCGTTAGACCGATTGGAAAGCCTAAAAAGCACGTAGAAAGCTTAAAAAGGACGTGTGCACACAGACACCGTGAGTGTGTCggggtttttttttgggtgtgtTTCGCTGCAGCTCTAATCGGCAGGGCCCAACGCGGATCCCCGCTCTGTCTCTGCCGCCTTGGTCGCACTATCTCCGGCTTCAGTCTCAGCCAGACTCCGATGAGTAAACGTGGCCCTTTTTTAGGGTGTGGAAGCAAGACACACCAAACCACTGAGTAAAAAGGTTCTTCATCCATATTGTTGACGCTATCTAGGTAAATTAATATGCTGGGCGTTAATCAGGCGAGCTGCAGTGTGATTAACCGCCGGTGAGAAAAAGATTGCTAAACCTGCTTAGCATTAGCTGGCTAACGACAGGCTAAcatgtagttagctagctaacgcgaTCATATTTTTTTCGTTGAGTGGGGTTATTTCCAGTTAGCTTAACGAGCTAACTACCTAAACTGAAACCCAGTTAGCTTTACAAACAGCTTTATAAAAGTAATTTGGTTTAATAGGAGAAATAGGAAATGACAACCAGTGTATAAGTGGGTCAATAGCAGTTAGCgagcttagctaactaactatatAAAATCAGCAGATAGCTATCTTAGTTTAGCTAACCTGGCTAGGCTATCTAGTTAGGTTGCTAGGTAACGCTAGCCTGCCACTTTGCTAGCCGGCTAATAGGTTAGGTTACTTAAGCTAGGTTATATTAGTTGGCAAAGTCTAGCTAACAGACCCTGGTTGTATAGGCTAGACCTATACTTTATTTAGCCAACACACTTAGCTAAACCAACTACTCAGCTCGTCAACAGAGCAACTGGATTAATATTGGGTGTTTTAAAGCAGGAAATACACGAACATTGTAGTGCAGTGGGCCTGGAGGCTTCTCCCTGGATGAGTACCCGAGCTACACTCGACTTCACCGGTACAATAAACCCAGTCATCTCCCTCTCTGACGGGTTTGTGGTTAAGGGATATAAGGATAAAAGTAGCTCCATTATAAGGACACTATTCTAGGCAGTACATTTTTCGTTTTTCACCGCACAGCCTCCACGCCTCCTCTTCCACGGGCTGCCCCAGATTACCCCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651892.1 True 1239 lncRNA 0.45 3 7927113 7929165

Neighbor

gene id symbol gene type direction distance location
tmx2 tmx2,LOC108412483,LOC105022872,LOC107664575 coding upstream 34615 7883194 ~ 7892498 (+)
LOC103021660 si:dkey-28b4.8,LOC108434786,LOC107664566,LOC107551445,LOC108262771,LOC107556825 coding upstream 86724 7815823 ~ 7840389 (+)
LOC103022802 NA coding upstream 169560 7748969 ~ 7757553 (+)
LOC107197796 NA coding upstream 185026 7734675 ~ 7742087 (+)
LOC103023957 tcirg1a,LOC108434797,LOC105908477,LOC106609897,LOC107679885 coding upstream 227809 7682038 ~ 7699304 (+)
LOC103028482 LOC108434761,LOC105891496,LOC106611657,LOC101069382,LOC108243062,LOC106594846,LOC106604652 coding downstream 91484 8020649 ~ 8029171 (+)
slc43a3 slc43a3 coding downstream 185914 8115079 ~ 8127288 (+)
LOC103029427 LOC108434779 coding downstream 254250 8183415 ~ 8206107 (+)
LOC103035882 NA coding downstream 280541 8209706 ~ 8227224 (+)
LOC103029746 LOC103029746 coding downstream 309697 8238862 ~ 8243702 (+)
G214684 NA non-coding upstream 609 7899502 ~ 7926504 (+)
G214686 NA non-coding upstream 19346 7905695 ~ 7907767 (+)
G214670 NA non-coding upstream 76680 7849697 ~ 7850433 (+)
LOC111195953 NA non-coding upstream 81147 7840928 ~ 7845966 (+)
G214638 ssrp1,ssrp1b,LOC107746478 non-coding upstream 126237 7796414 ~ 7800876 (+)
G214704 ctnnd1 non-coding downstream 145669 8074834 ~ 8085277 (+)
LOC111195960 NA non-coding downstream 308477 8237642 ~ 8245015 (+)
G214853 NA non-coding downstream 525579 8454744 ~ 8456163 (+)
G214868 NA non-coding downstream 686928 8616093 ~ 8658455 (+)
G214875 NA non-coding downstream 768763 8697928 ~ 8699697 (+)
LOC103021346 LOC108412479 other upstream 49995 7856162 ~ 7877118 (+)
pold4 NA other upstream 114077 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 1518045 6399076 ~ 6409068 (+)
G214175 NA other upstream 1642745 6283781 ~ 6284368 (+)
G214006 NA other upstream 2405438 5521184 ~ 5521675 (+)
G214773 NA other downstream 181783 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 1029134 8958299 ~ 9030598 (+)
sprn sprn other downstream 2646330 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 3017914 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 3196535 11125700 ~ 11195423 (+)

Expression


Co-expression Network