LOC111195960


Basic Information

Item Value
gene id LOC111195960
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 8237642 ~ 8245015 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651894.1
AATGTATGGAATACTGACATTAATGAAGTCTTGGATGATAATTCCTGGAATTTAGTATGGAGAAACATAAAATGTTCAACTCCTAGTATGAAGCTAAGATCTattcaaatgaaaatattacatAGAATACATTACACTCCTCAGAAATTACATGATTACAGACTTCATGTTTCAAATCTGTGCTGGAGATGTAAAAGAGAAGAAGGGTCACTTATCCATATGTTCTGGTCTTGCCCATGTGTATTACCTTTTTGGAAAAGTATTGTTGAACATTTGTCTAAAATcacaaatgttaaaatatcacTTTCTCCAAGACTAATGATATTAGGTGACACCTCTGTATGTAAACTTAGCAAAGTAGTAGCTAAAATGATTTTATCTTCTGCATTAATAg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651894.1 True 394 lncRNA 0.31 2 8237642 8245015

Neighbor

gene id symbol gene type direction distance location
LOC103035882 NA coding upstream 10418 8209706 ~ 8227224 (+)
LOC103029427 LOC108434779 coding upstream 31535 8183415 ~ 8206107 (+)
slc43a3 slc43a3 coding upstream 110354 8115079 ~ 8127288 (+)
LOC103028482 LOC108434761,LOC105891496,LOC106611657,LOC101069382,LOC108243062,LOC106594846,LOC106604652 coding upstream 208471 8020649 ~ 8029171 (+)
tmx2 tmx2,LOC108412483,LOC105022872,LOC107664575 coding upstream 345144 7883194 ~ 7892498 (+)
LOC107197794 LOC108434776,LOC106930291,LOC102224490,LOC103132489,LOC106944652,LOC105931504,LOC103464124,LOC107393648,LOC106518818 coding downstream 548 8245563 ~ 8252571 (+)
LOC103036505 LOC107556808,LOC107556784 coding downstream 9569 8254584 ~ 8266613 (+)
galnt2 galnt2,LOC107725470,LOC107676591,LOC107666462,LOC107743534 coding downstream 61227 8306242 ~ 8453818 (+)
cog2 cog2,LOC107601846,LOC107725477,LOC107552949,LOC107666500,LOC107743537 coding downstream 269343 8514358 ~ 8530448 (+)
phactr2 phactr2 coding downstream 295950 8540965 ~ 8649769 (+)
G214704 ctnnd1 non-coding upstream 152365 8074834 ~ 8085277 (+)
LOC111195956 NA non-coding upstream 308477 7927113 ~ 7929165 (+)
G214684 NA non-coding upstream 311138 7899502 ~ 7926504 (+)
G214686 NA non-coding upstream 329875 7905695 ~ 7907767 (+)
G214670 NA non-coding upstream 387209 7849697 ~ 7850433 (+)
G214853 NA non-coding downstream 209729 8454744 ~ 8456163 (+)
G214868 NA non-coding downstream 371078 8616093 ~ 8658455 (+)
G214875 NA non-coding downstream 452913 8697928 ~ 8699697 (+)
G214881 NA non-coding downstream 473808 8718823 ~ 8722998 (+)
G214942 NA non-coding downstream 593539 8838554 ~ 8841483 (+)
G214773 NA other upstream 126317 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 360524 7856162 ~ 7877118 (+)
pold4 NA other upstream 424606 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 1828574 6399076 ~ 6409068 (+)
G214175 NA other upstream 1953274 6283781 ~ 6284368 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 713284 8958299 ~ 9030598 (+)
sprn sprn other downstream 2330480 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 2702064 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 2880685 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 3365303 11610318 ~ 11613123 (+)

Expression


Co-expression Network