LOC111195964


Basic Information

Item Value
gene id LOC111195964
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 10112224 ~ 10140590 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651898.1
gtggctctttgaCAGAAGCACTGTATGCCTCAGTCAGTGgccacaggaagctgcagttcctcgtTTAACCGCTAGCTGAAACTCCGGAGCTGGAGCACAGCTGCAGACAGTACTCGCTAATCAGCAGCTGGTCAGGTTTGGAGACTCGGGAAAAAAACTCCAGCTCTGAAGCTCCTGCTGAATATGTGTGTGGAATGTGTAGCTAAAACTCCTGGAGGAAAGGGAGTAAAGATGTTTGATCCCACTAACTGGAGAATACCGCTCTCAACAGAGCAGCTTTCAGCCCATACTGTGTGGTTTTTGGGGTTAAACATCACTGAACAGCGCACTCAGAACAACAGCGCACAACTGAGAGAAGTCTAATGCGGCACTTTAAAAGCACTGGATAGTAagGTCATTGTAAGCTCTTCATCTACTGGTTTGTCAACTGGCCCAACCATGGGCACCAACTGTCTTCGTGAGCTTAGCATCAGTGCttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651898.1 True 479 lncRNA 0.49 3 10112224 10140590

Neighbor

gene id symbol gene type direction distance location
mmrn2 NA coding upstream 225479 9857376 ~ 9886745 (+)
glud1 glud1,glud1a,gdh01,LOC103026661,LOC108438199,LOC107743560,LOC107563055,LOC107725450 coding upstream 294531 9800696 ~ 9817693 (+)
LOC103028294 LOC108438200 coding upstream 352342 9696027 ~ 9759882 (+)
rufy2 rufy2,LOC107676589,LOC107743555,LOC107725492,LOC107563060 coding upstream 433167 9660500 ~ 9679057 (+)
cfap43 NA coding upstream 458372 9632391 ~ 9653852 (+)
LOC103041708 LOC108438182,LOC108263627,LOC107565930,LOC107666514,LOC107713893,LOC107696877,LOC107743575,LOC106606775 coding downstream 389039 10529629 ~ 10555221 (+)
LOC103041404 NA coding downstream 421824 10562414 ~ 10572740 (+)
dna2 dna2,LOC107743557,LOC107601826 coding downstream 454740 10595330 ~ 10612761 (+)
kmo kmo,LOC106930458,LOC106526537 coding downstream 487829 10628419 ~ 10653984 (+)
LOC103037124 rmdn2,LOC108413000,LOC107747293,LOC107665610 coding downstream 716816 10857406 ~ 10884537 (+)
G215309 NA non-coding upstream 37594 10074202 ~ 10074630 (+)
G215294 NA non-coding upstream 70510 10041207 ~ 10041714 (+)
G215287 NA non-coding upstream 126755 9985184 ~ 9985469 (+)
G215245 NA non-coding upstream 196307 9915387 ~ 9915917 (+)
G215236 bmpr1aa,LOC108438195,LOC107666410,LOC107696892 non-coding upstream 220336 9890822 ~ 9891888 (+)
LOC111195963 LOC100707324,LOC106606853 non-coding downstream 548 10141138 ~ 10157300 (+)
G215350 NA non-coding downstream 122947 10263537 ~ 10264736 (+)
G215397 NA non-coding downstream 361121 10501711 ~ 10507072 (+)
G215411 NA non-coding downstream 489866 10630456 ~ 10633037 (+)
G215419 NA non-coding downstream 513537 10654127 ~ 10654340 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other upstream 1081626 8958299 ~ 9030598 (+)
G214773 NA other upstream 2000899 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 2235106 7856162 ~ 7877118 (+)
pold4 NA other upstream 2299188 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 3703156 6399076 ~ 6409068 (+)
sprn sprn other downstream 434905 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 806489 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 985110 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 1469728 11610318 ~ 11613123 (+)
G215834 NA other downstream 2064911 12205501 ~ 12206164 (+)

Expression


Co-expression Network