LOC111195966


Basic Information

Item Value
gene id LOC111195966
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6086759 ~ 6087597 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651903.1
GAGGCTGGGCAAAGAGTACAGCCAAATTTGAGCAGGTACACTGTAGCATCCATCATCCGGACTTTCCGCAATGAGAATAGAACTGAAAGATTACCAACAAGAGGTGGACGGGGCCGTCTTCTGTCTCCTGAACAGAAAACAGAGATCATGAACATGGTTCTTGAAAATAACGCCATTACCTTACggcaaatacaaagaaaaataatagaaaacaatgagatatttcaaaatattgatAGGAGAGTCCTTGAGCTGGAGGTGGATGCAGTGGAGCACCAGTTCATCTTCATTGATGAGGTTGGATTCAACCTCACAAAAAGACGAAGGAGGGGAAGGAATATAATCGGCCAGCGTGCCATTGTTGAAGTCCCTGGCCAGCGCGGAGGGAACATCACAATGTGTGCAGCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651903.1 True 409 lncRNA 0.45 3 6086759 6087597

Neighbor

gene id symbol gene type direction distance location
lrpap1 lrpap1,LOC107749950,LOC107714242,LOC107551171,LOC107674255,LOC107556528 coding upstream 382910 5689706 ~ 5703849 (+)
LOC111195958 NA coding upstream 626255 5459757 ~ 5460504 (+)
LOC103044852 LOC108434764,LOC107671567 coding upstream 658994 5415209 ~ 5427765 (+)
LOC103034165 LOC108434807 coding upstream 677257 5401342 ~ 5409502 (+)
LOC103035563 LOC108263533,LOC108434806,LOC107712022,LOC107737080,LOC107671368 coding upstream 690639 5373278 ~ 5396120 (+)
LOC111195931 NA coding downstream 17177 6104774 ~ 6110266 (+)
LOC103039918 NA coding downstream 63091 6150688 ~ 6159645 (+)
LOC111195932 NA coding downstream 92653 6180250 ~ 6184176 (+)
LOC103039606 paip2b,LOC103039606,LOC107551309,LOC107674237,LOC108263850,LOC108426126 coding downstream 205513 6293110 ~ 6299551 (+)
LOC103039100 NA coding downstream 215119 6302716 ~ 6312607 (+)
G214126 NA non-coding upstream 258 6086241 ~ 6086501 (+)
G214125 NA non-coding upstream 17005 6069424 ~ 6069754 (+)
G214121 NA non-coding upstream 49554 6035494 ~ 6037205 (+)
G214046 NA non-coding upstream 277359 5752918 ~ 5809400 (+)
G214019 NA non-coding upstream 440920 5645394 ~ 5645839 (+)
G214134 NA non-coding downstream 25006 6112603 ~ 6113010 (+)
LOC111195955 NA non-coding downstream 130789 6218386 ~ 6235720 (+)
G214174 NA non-coding downstream 188117 6275714 ~ 6275923 (+)
G214215 NA non-coding downstream 293347 6380944 ~ 6473744 (+)
G214227 NA non-coding downstream 381876 6469473 ~ 6470200 (+)
G214006 NA other upstream 565084 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 727027 5349167 ~ 5359732 (+)
G213891 NA other upstream 912663 5173069 ~ 5174096 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other upstream 1496307 4510939 ~ 4590452 (+)
G213715 znf330 other upstream 1657797 4398585 ~ 4428962 (+)
G214175 NA other downstream 196184 6283781 ~ 6284368 (+)
LOC111196031 NA other downstream 311479 6399076 ~ 6409068 (+)
pold4 NA other downstream 1723381 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1768565 7856162 ~ 7877118 (+)
G214773 NA other downstream 2023351 8110948 ~ 8111325 (+)

Expression


Co-expression Network