LOC111195977


Basic Information

Item Value
gene id LOC111195977
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14911999 ~ 14923278 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651915.1
agagagagagagaggagagagagagagagatagcggAGAACATCTCTCCCAACACAATCCAGCTCAGAATTAGGCAGTAAAAGGCAATGTAGCTGTGGTTGACGCAGGCGGCGTGCCTGTGCGCCTGTCCGTGTGTGTGTCCATGCGGGCGTGTGCGTGCCAGGCCGAGAGGTGGCTCGGCCACTCCGGGGCCGGATTTGCATCAGGTTCCTGTGAGTGATGTCTTCACTCGAACTGTTGACTTTGCAACTGACCCGTGATCTGCTAACGGACATGAGGCAGGACTGCAGCACTGGCCCACAGCAGAGAGCCCACCCGACTGCCGAGCCTGGACTTCCTGCCTTTTCTGTGTAAGTGGGCACAGGGTTGAcctctgtaagtgtgtgtgtgtgtggtggggtgtgcatatatttctgttttttgtacatttttaggaCGAGAAATAGTCAAAATTTACAGGCAacccagagaaaaacaggtgcAAGCCTATGAAACTTTCAAAAAGAATATGAAGAAGCCATATATATTTCAGAAACACTATTCAGATTTGGAATCAGGCCACTTTCTAGCACTGCCAAATGAACCAAAGCACATTGgctatacaggtgcatcttaagaaatcttaaaaaaaaaaaaaaaaaactttatttcagtaattcggtTCAAAATGGAAAACTCATATCgcatagatgtattacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651915.1 True 701 lncRNA 0.47 3 14911999 14923278

Neighbor

gene id symbol gene type direction distance location
LOC111195974 NA coding upstream 271456 14639866 ~ 14640543 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 coding upstream 299431 14608175 ~ 14612568 (+)
sec23ip sec23ip,LOC107655440,LOC107666414,LOC107743502,LOC107601884 coding upstream 406153 14493853 ~ 14505846 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 432939 14454016 ~ 14479060 (+)
bag3 bag3 coding upstream 461128 14442676 ~ 14450871 (+)
fancl fancl,LOC107585345 coding downstream 593460 15516738 ~ 15542681 (+)
LOC103023506 LOC103023506 coding downstream 926574 15849852 ~ 15854753 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 coding downstream 971327 15894605 ~ 16015675 (+)
LOC103022884 NA coding downstream 1094122 16017400 ~ 16022839 (+)
rin2 LOC108442550,LOC107673857 coding downstream 1101542 16024820 ~ 16086964 (+)
LOC111195976 NA non-coding upstream 12 14892201 ~ 14911987 (+)
G216541 NA non-coding upstream 166680 14744717 ~ 14745319 (+)
G216532 papolg non-coding upstream 210261 14696928 ~ 14701738 (+)
G216530 papolg non-coding upstream 216225 14695339 ~ 14695774 (+)
G216523 NA non-coding upstream 256718 14655036 ~ 14655281 (+)
G216793 NA non-coding downstream 746240 15669518 ~ 15669736 (+)
G216831 NA non-coding downstream 991653 15914931 ~ 15923311 (+)
G216893 NA non-coding downstream 1185451 16108729 ~ 16109441 (+)
G216894 ddx43,LOC107693529,LOC107588708,LOC105911636 non-coding downstream 1194581 16117859 ~ 16128583 (+)
G216910 NA non-coding downstream 1332210 16255488 ~ 16323301 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 131686 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 564666 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 1161693 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 1427628 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 1595837 13316075 ~ 13316162 (+)
borcs7 borcs7 other downstream 2081263 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 2226064 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 3080975 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 3388615 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 3819928 18743206 ~ 18744327 (+)

Expression


Co-expression Network