LOC111195980


Basic Information

Item Value
gene id LOC111195980
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19219513 ~ 19231760 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651918.1
GGGCAGGTGCTGACTGAGAGGCTGTTGGGTAAATGATGGTGTTCCACCTGCCCTCCGTGTGTGCTGGTAGCCACCTGCCGGTTACGACTGGCTGTCTCGTAGGGATCAATGCACACATACCACATGTCATCAAGACAACGTTTCATAATAGTGACTAACAGCAGGAAGGGCCACCTTTAAGAGCGCGCTACAAAACGTCACCTGTGCATCTCGTCACGTTGCTGTTTGGACTGAAAGCTTCCAAGTTGAGAAAACAAGAATGCCAAGAATGTGGCTGGATGAAATAACAGCAGTGGCACTAGTGCCTAAGCAGGCCAacagACTTTCAGATTGATGGCCACAGCACAGCGAGGACGTCCCTCTGGCTGGAAAAGACACAGCAGTCGGAGTTCGGCTAATGAGAGTCTCAAAGACACCGTGAGAAATCACTTTTCTCCGGATATAAAGGGGCCAGACATGGAATCTCCATTCACAATCtcaatgacatttaaaaagtgcagaaGGATCTGcagaagagcagcagcagctgaagaAGTGTGAAATGCTCTGATAGCCCGGGCTCGTGAAATAGGGCTAACCCATTCTGGCACATTGGAAAAGAGCGGAGGACAAAAGCTCAGTCTAATGGGACATGTCTCAGCATGTGAGAGAGGGGATGCAGTTACACAGTCATCAGACAGACATAGTGAAGAACAAGAGGGTGTGGGCCCTGATGAAAAATACATTTGCTCTAAGACATTCAATCATCAGTTATTCTGTGATTCTAATCATTCTAATGTCCGTGTAGAAAGTGGTCATGCATTTTCTTTAGGCGTCAGAGATCTAAACAACTCTTTCTAAGTCATCCTAATGGTAAGTGGAATATTAAATGTGATGGTTTAACAGCAGTAAGggcaaactaaataataaaatatggctGAAACGAAATAAGACCTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651918.1 True 939 lncRNA 0.46 4 19219513 19231760

Neighbor

gene id symbol gene type direction distance location
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding upstream 75277 19095750 ~ 19144236 (+)
LOC103033826 LOC108443358 coding upstream 130282 19080725 ~ 19089231 (+)
LOC103032870 NA coding upstream 199767 19017307 ~ 19019746 (+)
LOC107197625 vstm4 coding upstream 229463 18975059 ~ 18990050 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289 coding upstream 271502 18942248 ~ 18948011 (+)
LOC103036761 LOC108442312 coding downstream 32216 19263976 ~ 19269426 (+)
LOC103037070 antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351 coding downstream 48410 19280170 ~ 19316024 (+)
mettl18 NA coding downstream 140813 19372573 ~ 19374811 (+)
marveld1 marveld1,LOC107665576 coding downstream 152389 19384149 ~ 19387991 (+)
LOC103037144 LOC108443489,LOC103368019,LOC106916418,LOC106964416 coding downstream 542556 19774316 ~ 19804731 (+)
G217472 NA non-coding upstream 279610 18939025 ~ 18939903 (+)
G217439 NA non-coding upstream 446102 18718305 ~ 18773411 (+)
G217442 NA non-coding upstream 469433 18747392 ~ 18750080 (+)
G217438 NA non-coding upstream 505203 18714051 ~ 18714310 (+)
G217435 NA non-coding upstream 520362 18697993 ~ 18699151 (+)
G217696 NA non-coding downstream 41177 19272937 ~ 19273154 (+)
G217715 zdhhc16,LOC108443446 non-coding downstream 130918 19362678 ~ 19365255 (+)
G217768 NA non-coding downstream 266304 19498064 ~ 19518320 (+)
G217784 NA non-coding downstream 352321 19584081 ~ 19584405 (+)
G217787 NA non-coding downstream 367218 19598978 ~ 19599243 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 2524 19160653 ~ 19216989 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 372485 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 475186 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 902285 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 1180161 18004253 ~ 18039352 (+)
rrp12 rrp12,LOC106529656 other downstream 92146 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 788654 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 1104187 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 2829203 22060963 ~ 22098259 (+)
G218351 NA other downstream 2985539 22217299 ~ 22218860 (+)

Expression


Co-expression Network