LOC111195998


Basic Information

Item Value
gene id LOC111195998
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24054267 ~ 24055122 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651936.1
ttgtcattgACAGTGCGaagaagctccagctccagacCTCACCACCACCTCTCATCCGGAGCCATCCAGCCAGGGAGACACTGCACTGTCACCCACCATTAATACACAATGCAGATCCCTGAAACGCCCTGTCACCAACTTTCGGACCTCCTTTGTGTGTCGTTTCAGGTCTCCTCGTCGAGTCCTGGTGCAGGTAGAAGAGGCAGATCCCTCTCACCGGCTGGACCTTCAGGACACAAAGCCTGAACTGGAGCCAGTGCCAGCTGCACAGGACAAGGACGACCTGGAGAACGACGTGGAGGTCCTGGAGTTGGAGCATCACAGGCCAGGAGAGACAGCTCCAAACAGAAAGAGAGGATGGCTACAGCACCTGCTCAGCTGCTTCAGGTGGAAAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651936.1 True 398 lncRNA 0.56 3 24054267 24055122

Neighbor

gene id symbol gene type direction distance location
LOC103041217 mat1a,LOC107582520,LOC107678534,LOC107733750,LOC107708460,LOC108263526,LOC105911600,LOC107570529 coding downstream 13899 24030874 ~ 24040368 (-)
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding downstream 291463 23750134 ~ 23762804 (-)
alox5 alox5,alox5a,LOC107747471,LOC107708393,LOC107690200,LOC107582511,LOC107678516 coding downstream 311621 23723299 ~ 23742646 (-)
LOC111195939 fam21c,LOC107678570,LOC107589565 coding downstream 339909 23709285 ~ 23714358 (-)
washc2c NA coding downstream 345997 23693256 ~ 23708270 (-)
LOC103040609 LOC103040609,LOC108441766,LOC108263463,LOC107678536,LOC107708462,LOC107570532,LOC106577244 coding upstream 24745 24079867 ~ 24091509 (-)
lzts2 lzts2,lzts2a,LOC107733684,LOC107582523,LOC107708464,LOC107690159,LOC107570533 coding upstream 82700 24137822 ~ 24255139 (-)
LOC103038918 LOC108441763,LOC108263187 coding upstream 272961 24328083 ~ 24401465 (-)
LOC103039233 NA coding upstream 350785 24405907 ~ 24428299 (-)
dcaf10 dcaf10,wdr32,LOC107708468,LOC107678556,LOC107733687 coding upstream 392691 24447813 ~ 24457455 (-)
G218779 zgc:154058,LOC103041715,LOC107582519,LOC107570530,LOC107708463,LOC107733751,LOC107678495,LOC108441772 non-coding downstream 28378 24022837 ~ 24025889 (-)
G218777 NA non-coding downstream 69751 23981181 ~ 23984516 (-)
G218765 NA non-coding downstream 107721 23946214 ~ 23946546 (-)
G218731 ccar1,LOC107678563 non-coding downstream 158453 23872841 ~ 23895814 (-)
G218732 NA non-coding downstream 174864 23878257 ~ 23879403 (-)
G218793 NA non-coding upstream 15793 24070915 ~ 24073134 (-)
G218820 NA non-coding upstream 79063 24134185 ~ 24136995 (-)
G218829 NA non-coding upstream 112273 24167395 ~ 24170774 (-)
G218927 NA non-coding upstream 444551 24499673 ~ 24507296 (-)
G218929 NA non-coding upstream 454523 24509645 ~ 24509912 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other downstream 196760 23850963 ~ 23857507 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other downstream 204467 23835779 ~ 23849800 (-)
march8 march8 other downstream 397281 23454175 ~ 23656986 (-)
G218545 NA other downstream 1208062 22844833 ~ 22846205 (-)
G218329 eif5,LOC107589547 other downstream 1997774 22051889 ~ 22056493 (-)
G218781 NA other upstream 403 24055525 ~ 24056877 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other upstream 628115 24683237 ~ 24700649 (-)
LOC103046115 lrit3 other upstream 1163027 25218149 ~ 25226250 (-)
G219510 NA other upstream 2417506 26472628 ~ 26474247 (-)
zbtb18 zbtb18,LOC107666464,LOC107587843 other upstream 2683682 26738804 ~ 26757592 (-)

Expression


Co-expression Network