LOC111196006


Basic Information

Item Value
gene id LOC111196006
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24790077 ~ 24792821 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651944.1
AGATGTACCTGGCTAAGCAATAGCATCTGTGTTTTCAACACAAGCTCCTGAGATGGCAGCAGCATGCAGACAACCAGAACATGCACTTgaaaaggtagggccactggCTGCAGGACCCAGAAACTGCAAATGAGAGtcctgcttattttttttctaatattttcaaTGCTTGAACCGCACAACAGCTGAATGATGGGTGTGTGTTAACTTCAGTTTGTGGTGAGGAAGGGTGGGGCTCTGCCCTGCAGGGTTAAGTGAACATGCCCTGCAGTTGTTATGGAGCAGCAGCTGCTGCGTGTGTCTGTTCAATgcatctgcacacacacattcctttTGTTGCAGCTGACACTGTCTTTAATGCTGAAGGATTTTAACCAGCTGCAACTTCTGTGTAGACACACAGCAGCTAAACACGTTAGCCAAACCAACAGACCAGGGAAATGTTAcaaagacagatttttttttcaaatcagcagtggttaagatttttttcttttacatttgaaTGAAAAGAGGGCAAAATACTATAATAAATGGTATCAATGTGCCTCATCTACCATTTCTGCAAAGTCAAATATATTCATTAATTTTTAAAGTGTCTGGCAGGTtctggaacattttttttttttgcaagaatAGCTTTTGCTGGTTTCCCCGAGTTATCTGGCACTGCTAATGGTGCTCATACAAGATTTAAAGCAAAGAAATGCAGAATCAGATCTAAAAGAGTGAGCGAGCCAGCTAAAAGTTGAGATGCTATAGAGTCCTCAGTAAATTCAccagattcatccactctgaaaaaGACACACAGTACAGGTTTTGAAAGTGCCCTTTTTAGCATGCTCAGTAAAAATTACACATCTTACCAAAAACTTAGACTGAAACTTTAAGTACAAAGATGAAACAAGTCATACAGGATTGTCCCTTCAATCTTCCACTGTTGGTCAGACTTGGAAGCAGATCTCCAAAGtcactgctgaaaaaaaaaatgaggttaGTATTAACTTTGTACTTATAGGAGCAGTTTcctagacagggattaagcctcaTCTTGGAATATTGTTTTCAATGAGAGATTCACCACTGAAAAGTAAAGTGGTCTATAATTAGGCCTAATCTCTTTCCAGGAAAAGTGCACATTATCAGATAGATAAGGTCAGGCCagccttgtattttttttttgttgggaaaGATTTACTTTcaagaaagtaaataattaGCTTTGACTGGATATATTtccatttacacatttaaacgtCAACTCCACAAACCTTACAGATCgtataattcatttttatatttattactgtGGCAGTGTGAGGATCAGTGGGCAGAAAGTTACCAAAAAAGGTGATTgagatataaaatgtaaaacaaaaaaaagtttgcctTTTAAGTGTTTGTAACATCTTAAAATGTACACTACTTACACTGGTATGAGTTGATATCAAGGTTACATAGCTGCTAACACTACATTAAGAATCATGAGAAACATTACCAATGTGCTCCTGACCTGCTTTGGTCCCCCTTCAGCTCCCATCATTACACCAACCAAAATCAACCAAATAGCTCCCTTTTAGGGTGCCCTCCTGCCTTTAAATAACTTAAGTCCTACCCAGAATATACCAAAGGGTAATTACTTTGCAGGCAGGTGGACTGATATGTACACTACATACATAATTACTTAATACCATAAACATGCATGCCATACTTGGACGTCCAGGTAATCATACATTATTCAATATTAGGATATTTTTTAcatagttttctttctttttcctctcaCAGGTACCCTCTTTTCCCCCTGTCCCAGGGTGACTCTTGGTCTTTATAAAGACTTAAAGTACCTGGGCGGCTCTgcactgctttttttatttaattaattatttatttatttttacaggaaCCAGAGCTGAGGACCGAGGGCCACCTGGCGGTGTGTTCTGCAGgagcagggttgccagattcaaCATGCCAATAAACATTACATAGTGTTAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651944.1 True 1999 lncRNA 0.39 2 24790077 24792821

Neighbor

gene id symbol gene type direction distance location
cdc25b cdc25b,LOC108417292 coding upstream 2737 24779609 ~ 24787340 (+)
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding upstream 111964 24658431 ~ 24678113 (+)
LOC103044475 rab11fip5,LOC108263817 coding upstream 132429 24598605 ~ 24657648 (+)
LOC103046402 NA coding upstream 192562 24591088 ~ 24597515 (+)
LOC111195941 NA coding upstream 204612 24580100 ~ 24585465 (+)
ap5s1 ap5s1 coding downstream 2069 24794890 ~ 24798599 (+)
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding downstream 391813 25184634 ~ 25192379 (+)
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding downstream 433620 25226441 ~ 25241001 (+)
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding downstream 518022 25310843 ~ 25315607 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding downstream 547643 25340464 ~ 25406863 (+)
G218948 NA non-coding upstream 149030 24589310 ~ 24641047 (+)
G218920 NA non-coding upstream 219345 24567317 ~ 24570732 (+)
G218893 NA non-coding upstream 310855 24474824 ~ 24479222 (+)
G218853 pomk non-coding upstream 328768 24459393 ~ 24461309 (+)
G218842 NA non-coding upstream 468485 24318267 ~ 24321592 (+)
G219067 NA non-coding downstream 153903 24946724 ~ 24947071 (+)
G219069 NA non-coding downstream 216320 25009141 ~ 25009529 (+)
G219074 NA non-coding downstream 248416 25041237 ~ 25041789 (+)
G219102 NA non-coding downstream 291636 25084457 ~ 25084856 (+)
G219141 NA non-coding downstream 341132 25133953 ~ 25138947 (+)
LOC103046104 LOC108441759 other upstream 323210 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 718451 24064495 ~ 24071626 (+)
G218758 NA other upstream 726289 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 761096 23981135 ~ 24028981 (+)
G218651 NA other upstream 1081834 23696577 ~ 23708243 (+)
G219050 NA other downstream 49481 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 368906 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 464129 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 645898 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2407631 27200452 ~ 27236616 (+)

Expression


Co-expression Network