LOC111196009


Basic Information

Item Value
gene id LOC111196009
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25395800 ~ 25397172 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651947.1
tctggtaATCTGTAAGCATTTGGGCTAAATAAAGCTCTGTGTTAAAATATTAGTGATTTGCTTACTTTTTCTACTTTAACTGACGTGGGTTGTTTACAAACATCCAGCAAATCTTTCCCTTTTTGTCAGCCGGCTGTGGGTGGTGTAATTCCTGCGTGCCTAATTCTAATATATGGGTTGATTGCCTTTAGTTCATTGGCTGAATAATCTGACCTGGGACTATATGTAGGCCAGGTGGCTGTTACCTGGGACACACCCTCTGTGGTTCCCACCCCCCTTCCTCGGCGTGCTGCTGGGCGAGGTCTGCAGTTTGGCGTTTGGTGTGGCTGGGTGAATGCTCTCCTTTGTCTTGGGAATTTTCACAAGCGTGCGTGCTGAGGCATTTGTGAGGAGATTGCTCCGGTGGTTTATGCCACGTGCAAAGGTTTCCGTCTGTGTGTGAAGCTACGAGAAGTGTTGTGACTTTCCCGCTGTCTGCCGTGGAGAAGTGAAGCCTTGGAAGCTGGGGTGGTGGAGTACGGGGAGTGTCCAATACAGCTCtacccgtgtgtgtgtgagatcacCTGTGTCCCCCTCTTCGCGGAGGCTCCTCCCCTGCATTAgtgctattgttttttttttttgtattttcttttaggCTTTATggttcttttctattttttttcctctgtttattattgttatattttgtgttaATTGTTTTGTATGTCCAGACTCagtcctggtgtgtgtgctgccTCCGGTGAGCTGTAGCGGActggtttgctttttttttctgaacgcGCGCTGCATGTGACTCAgcgcgctgtgtgtgtgtgtgtgtctgtgtgtgtgttactataCTTCCTGGGTCCTGAGTTGCGCGCTGCTGCGGGAGGGAAAGCCTGTATGGTCAGTAAgcgtgatttatttatttttatgttgccGGGCTGTGTATGGTTTAGTTGTGTTGgtataattgtttgtttgagttaatttgtttgttttcttttgtgtcTGAACAGGAGCTGGGAGTGGTGACAGGCTGCTGAGGTGTTGAAGTCTAACTGGGTGTGcttagtggtgtttgtgtgctgtgtaGTGGGGACTCCTCTCACCTGCAGTTAGCACTGGTCACAGTGTGCTCCAGCCCTGTTcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651947.1 True 1139 lncRNA 0.47 4 25395800 25397172

Neighbor

gene id symbol gene type direction distance location
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding upstream 80193 25310843 ~ 25315607 (+)
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding upstream 154799 25226441 ~ 25241001 (+)
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding upstream 203421 25184634 ~ 25192379 (+)
ap5s1 ap5s1 coding upstream 597201 24794890 ~ 24798599 (+)
cdc25b cdc25b,LOC108417292 coding upstream 608460 24779609 ~ 24787340 (+)
c25h9orf72 cunh9orf72,zgc:100846,c3h9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028 coding downstream 20208 25417380 ~ 25430559 (+)
LOC103041526 NA coding downstream 34074 25431246 ~ 25437272 (+)
kiaa1109 kiaa1109 coding downstream 136419 25533591 ~ 25612184 (+)
letm1 letm1,LOC107556916 coding downstream 245381 25642553 ~ 25684011 (+)
LOC103023829 foxi3 coding downstream 617151 26014323 ~ 26018552 (+)
LOC111196010 NA non-coding upstream 5821 25389092 ~ 25389979 (+)
G219173 NA non-coding upstream 127326 25264106 ~ 25268474 (+)
G219167 NA non-coding upstream 143291 25252285 ~ 25252509 (+)
G219162 LOC103045808,LOC108263479,LOC108421350,LOC103044089,LOC107747568,LOC107556900,LOC103043775,LOC107666441 non-coding upstream 149806 25244129 ~ 25245994 (+)
G219155 NA non-coding upstream 177783 25217719 ~ 25218017 (+)
G219271 NA non-coding downstream 48099 25445271 ~ 25445499 (+)
G219282 NA non-coding downstream 235304 25632476 ~ 25692517 (+)
G219286 NA non-coding downstream 350059 25747231 ~ 25807019 (+)
G219367 NA non-coding downstream 503471 25900643 ~ 25900869 (+)
G219374 NA non-coding downstream 549837 25947009 ~ 25947344 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 93213 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 221092 25161727 ~ 25174708 (+)
G219050 NA other upstream 553267 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 928933 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 1324174 24064495 ~ 24071626 (+)
LOC103047652 NA other downstream 41547 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 1803280 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 3093674 28490846 ~ 28551769 (+)
G220074 NA other downstream 3322084 28719256 ~ 28720661 (+)
G220194 NA other downstream 3744195 29141367 ~ 29142018 (+)

Expression


Co-expression Network