CI01000009_02654102_02655554 (CASK)


Basic Information

Item Value
gene id CI01000009_02654102_02655554
gene name CASK
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2654102 ~ 2656438 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02654102_02655554.mRNA
ACATTTCAACTCCGCTTCAGCTCATGATCACCAGATCAGATGTATTAGACCTGCTGAACAGTTGAAACAATATTAAATCATTTTAAAATATTTAATCGTGATTATATTATCTTATTTTTGGGTGATATTCCACTTGTTGAGCTTTGAAAATTTCACATACAAATTTCTAGTGAGACTACAAACAACAATACTTTATTTATTTTATTTTTTTTATGATTTACATTTTTTATTATTTAAAATTTTTTCCCCTTCAAATTGACAAAACAGTACATTCCATTTTACAGATATAGGTGTTTTATCAAACCTGTATTCAAACAACAAACAATTCAATCAACAATACTTTTGTTAAATATTCTGTCTGGACTTTGTTTAAATAAATCAAGGTGGTCTTTCTTCGTTGTTTGTTGAACTGAACTTTTAGAAATCACTCAGAATCACATATGTATAATTAATTACAATGTTTACTTTTATTTGTTTGTTTTTTTCACTTCCCTTGACTTTTAATGTCAATTCCAGTGTGGTCTGTACAACAGAGTAACTATCTTTTTTTGTCTTTTCTTTCTTTTTCGTTGCAGCCTCATTGTGTGTTGCTGGCATCAAAGGAGAACTCTGCTCCAGTGAAACTGGGTGGCTTCGGTGTGGCTATACAGCTGGGAGAGTCCGGATTAGTGGCTGGAGGTACTTGGAAAAACCCTGTTTAAACTTGTACAACACATGGACATTTCCTGTGTACTTTACCTGCACTGCAAACTAGGGGCTTCCTTCTGGTCAGCAGTATTCATATGTAGTAAAAGCATATAATTGAAATTAAATGAAGCACAAACTACATAAGAAAATAACATCCTCTTTTCATTATATTGGCTTGAAGAACTGAAACTCAGAATATGAAGCTTTCACTTGTATCACAAAGAGTATTTATGCATTTTGTTCCTTATTTTATTATACAAAACCATTTAGGACATAATAACTCTCACTCAGTGTCACTTCATAATTTGGGTCTTGAAAGTCATTCAGGCAATGATTTTGTCCTGATTCATGAGCTCTGTGTCACTAATGCTGTTTGCCGGGTGGGCACTCCGCACTTCATGGCCCCTGAGGTGGTGAAAAGAGAACCCTATGGGAAACCTGTGGATGTTTGGGGCTGCGGTGTCATTCTCTTCATCCTGCTGAGTGGCTGCCTGCCCTTCTATGGCACTAAAGAACGCCTGTTTGAAGCAATCATTAAAGGAAAATACAAGATGAACCCGCGGCAGTGGGGCCACATTTCAGAGAGTGCCAAAGACCTGGTGCGTCGAATGCTGATGCTGGACCCTGCTGAAAGGATCACAGTTTATGAAGCTCTCAACCACCCCTGGCTCAAG

Function

symbol description
cask Enables protein serine/threonine kinase activity. Involved in several processes, including negative regulation of cell-matrix adhesion; negative regulation of keratinocyte proliferation; and negative regulation of wound healing. Located in cell-cell junction; cytoplasm; and nuclear lumen. Colocalizes with basement membrane. Implicated in FG syndrome and syndromic X-linked intellectual disability Najm type.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02654102_02655554.mRNA True 1361 mRNA 0.37 3 2654102 2656438

Neighbor

gene id symbol gene type direction distance location
CI01000009_02610459_02610721 NA coding downstream 43381 2610260 ~ 2610721 (-)
CI01000009_02591882_02593586 RPL8.S, RPL8 coding downstream 60341 2591863 ~ 2593761 (-)
CI01000009_02403219_02417215 FAM160A2 coding downstream 236887 2403156 ~ 2417215 (-)
CI01000009_02391182_02393863 NA coding downstream 260239 2390445 ~ 2393863 (-)
CI01000009_02358636_02361913 HPX coding downstream 292153 2358470 ~ 2361949 (-)
CI01000009_02682050_02707583 NA coding upstream 25170 2681608 ~ 2707623 (-)
CI01000009_02786421_02791586 NA coding upstream 129873 2786311 ~ 2792435 (-)
CI01000009_02844171_02861309 MAOB coding upstream 186573 2843011 ~ 2861309 (-)
CI01000009_02885473_02893975 NA coding upstream 229030 2883688 ~ 2893975 (-)
CI01000009_02904768_02914992 EFHC2 coding upstream 248253 2904691 ~ 2915247 (-)
G52406 NA non-coding downstream 75124 2574486 ~ 2578978 (-)
G52409 NA non-coding downstream 87538 2563762 ~ 2566564 (-)
G52440 NA non-coding downstream 140431 2512957 ~ 2513671 (-)
G52379 NA non-coding downstream 202462 2448366 ~ 2451640 (-)
G52378 NA non-coding downstream 226254 2427249 ~ 2427848 (-)
G52469 NA non-coding upstream 154607 2811045 ~ 2811334 (-)
G52478 NA non-coding upstream 166524 2822962 ~ 2823928 (-)
G52488 NA non-coding upstream 255867 2912305 ~ 2912542 (-)
G52489 NA non-coding upstream 256680 2913118 ~ 2913345 (-)
CI01000009_02975388_02982670 NA non-coding upstream 327157 2975388 ~ 2985391 (-)
G52410 NA other downstream 91569 2551724 ~ 2562533 (-)
G52098 NA other downstream 1246475 1401932 ~ 1407627 (-)
CI01000009_03261739_03262843 NA other upstream 604765 3261038 ~ 3262843 (-)
G52828 NA other upstream 1560982 4217420 ~ 4231469 (-)
G53515 NA other upstream 2845957 5502395 ~ 5505248 (-)
G55814 NA other upstream 5769383 8425821 ~ 8428012 (-)

Expression


Co-expression Network