trnaa-agc_18


Basic Information

Item Value
gene id trnaa-agc_18
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 31403707 ~ 31403779 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnaa-agc_18
GGGGGATTAGCTCAAATGGTAGAGCGCTCGCTTAGCAAGCGAGAGGTAGCGGGATCGATGCCCGCATCCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-agc_18 True 73 tRNA 0.59 1 31403707 31403779

Neighbor

gene id symbol gene type direction distance location
trnak-cuu_12 NA coding upstream 10901 31392734 ~ 31392806 (+)
mea1 mea1 coding upstream 105451 31294181 ~ 31298256 (+)
dlk2 dlk2 coding upstream 120883 31244160 ~ 31282824 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838,LOC107696385 coding upstream 405209 30977403 ~ 30998498 (+)
yipf3 yipf3,LOC107696384,LOC107728076 coding upstream 433057 30961520 ~ 30970650 (+)
trnag-gcc_3 NA coding downstream 11121 31414900 ~ 31414970 (+)
trnag-gcc_5 NA coding downstream 18973 31422752 ~ 31422822 (+)
trnak-cuu_13 NA coding downstream 24461 31428240 ~ 31428312 (+)
mrps6 mrps6 coding downstream 26501 31430280 ~ 31436529 (+)
psap psap coding downstream 39252 31443031 ~ 31455830 (+)
G220702 NA non-coding upstream 61000 31339891 ~ 31342707 (+)
G220700 NA non-coding upstream 69164 31334255 ~ 31334543 (+)
G220694 ppp2r5d non-coding upstream 73525 31324844 ~ 31330182 (+)
G220692 ppp2r5d,LOC106605890 non-coding upstream 94828 31306769 ~ 31308879 (+)
G220640 NA non-coding upstream 228671 31172175 ~ 31175036 (+)
G220750 NA non-coding downstream 112351 31516130 ~ 31520497 (+)
G220781 NA non-coding downstream 143961 31547740 ~ 31548009 (+)
G220788 NA non-coding downstream 199279 31603058 ~ 31603325 (+)
G220795 NA non-coding downstream 247134 31650913 ~ 31651924 (+)
G220802 NA non-coding downstream 341851 31745630 ~ 31746889 (+)
G220610 NA other upstream 451766 30949012 ~ 30951941 (+)
G220336 NA other upstream 1610211 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 1763306 29636061 ~ 29640401 (+)
G220194 NA other upstream 2261689 29141367 ~ 29142018 (+)
G220074 NA other upstream 2683046 28719256 ~ 28720661 (+)
G220800 NA other downstream 333118 31736897 ~ 31738196 (+)
map10 NA other downstream 880798 32284577 ~ 32288850 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 1098995 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 1209695 32613474 ~ 32677285 (+)
bcl2l11 bcl2l11 other downstream 1809849 33213628 ~ 33232791 (+)

Expression


Co-expression Network