trnag-gcc_48



Basic Information


Item Value
gene id trnag-gcc_48
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42701989 ~ 42702059 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>trnag-gcc_48
GCATTGGTGGTTCAGTGGTTGAATTCTCGCCTGCCACGCGGGAggcccgggttcgattcccggccaaTGCA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
trnag-gcc_48 True 71 tRNA 0.62 1 42701989 42702059

Neighbor


gene id symbol gene type direction distance location
LOC103043683 NA coding upstream 479935 42215743 ~ 42222054 (+)
LOC103042542 NA coding upstream 1407739 41287961 ~ 41294250 (+)
LOC103044280 NA coding upstream 1422911 41276985 ~ 41279078 (+)
LOC111195996 NA coding upstream 1503164 41195985 ~ 41198825 (+)
LOC111196049 NA coding upstream 1603161 41089502 ~ 41098828 (+)
LOC103047539 NA coding downstream 9401 42711460 ~ 42721934 (+)
fam204a fam204a coding downstream 72186 42774245 ~ 42802285 (+)
rab11fip2 rab11fip2 coding downstream 206446 42908505 ~ 42935835 (+)
LOC103028407 NA coding downstream 487301 43189360 ~ 43193440 (+)
LOC103043584 LOC108426108 coding downstream 598827 43300886 ~ 43310949 (+)
trnag-gcc_47 NA non-coding upstream 262 42701657 ~ 42701727 (+)
G223207 NA non-coding upstream 71726 42629977 ~ 42630263 (+)
G223201 NA non-coding upstream 169567 42532110 ~ 42532422 (+)
G223198 NA non-coding upstream 212114 42489583 ~ 42489875 (+)
trnag-gcc_46 NA non-coding upstream 238620 42463299 ~ 42463369 (+)
trnag-gcc_49 NA non-coding downstream 99 42702158 ~ 42702228 (+)
G223218 NA non-coding downstream 28538 42730597 ~ 42730923 (+)
G223241 NA non-coding downstream 237148 42939207 ~ 42941673 (+)
G223245 NA non-coding downstream 311930 43013989 ~ 43014235 (+)
G223274 NA non-coding downstream 494009 43196068 ~ 43203769 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other upstream 330408 42243811 ~ 42371581 (+)
LOC103046574 NA other upstream 1508780 41184961 ~ 41193209 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other upstream 1628673 41065658 ~ 41073316 (+)
LOC103047655 NA other upstream 2349333 40349807 ~ 40352656 (+)
zfyve21 zfyve21 other upstream 2362337 40331073 ~ 40339652 (+)
G223269 NA other downstream 461222 43163281 ~ 43166134 (+)
G223335 micu1 other downstream 909564 43611623 ~ 43615389 (+)
mcu mcu other downstream 978092 43680151 ~ 43769000 (+)
mcph1 mcph1 other downstream 2194118 44896177 ~ 44947346 (+)
tmem14a tmem14a,LOC108425445 other downstream 2263637 44965696 ~ 44968097 (+)

Expression



Co-expression Network