trnag-gcc_5


Basic Information

Item Value
gene id trnag-gcc_5
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 31422752 ~ 31422822 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnag-gcc_5
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAggcccgggttcgattcccggccaaTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnag-gcc_5 True 71 tRNA 0.62 1 31422752 31422822

Neighbor

gene id symbol gene type direction distance location
trnag-gcc_3 NA coding upstream 7782 31414900 ~ 31414970 (+)
trnaa-agc_18 NA coding upstream 18973 31403707 ~ 31403779 (+)
trnak-cuu_12 NA coding upstream 29946 31392734 ~ 31392806 (+)
mea1 mea1 coding upstream 124496 31294181 ~ 31298256 (+)
dlk2 dlk2 coding upstream 139928 31244160 ~ 31282824 (+)
trnak-cuu_13 NA coding downstream 5418 31428240 ~ 31428312 (+)
mrps6 mrps6 coding downstream 7458 31430280 ~ 31436529 (+)
psap psap coding downstream 20209 31443031 ~ 31455830 (+)
c1d c1d coding downstream 99463 31522285 ~ 31525343 (+)
ntpcr ntpcr coding downstream 867030 32289852 ~ 32296881 (+)
G220702 NA non-coding upstream 80045 31339891 ~ 31342707 (+)
G220700 NA non-coding upstream 88209 31334255 ~ 31334543 (+)
G220694 ppp2r5d non-coding upstream 92570 31324844 ~ 31330182 (+)
G220692 ppp2r5d,LOC106605890 non-coding upstream 113873 31306769 ~ 31308879 (+)
G220640 NA non-coding upstream 247716 31172175 ~ 31175036 (+)
G220750 NA non-coding downstream 93308 31516130 ~ 31520497 (+)
G220781 NA non-coding downstream 124918 31547740 ~ 31548009 (+)
G220788 NA non-coding downstream 180236 31603058 ~ 31603325 (+)
G220795 NA non-coding downstream 228091 31650913 ~ 31651924 (+)
G220802 NA non-coding downstream 322808 31745630 ~ 31746889 (+)
G220610 NA other upstream 470811 30949012 ~ 30951941 (+)
G220336 NA other upstream 1629256 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 1782351 29636061 ~ 29640401 (+)
G220194 NA other upstream 2280734 29141367 ~ 29142018 (+)
G220074 NA other upstream 2702091 28719256 ~ 28720661 (+)
G220800 NA other downstream 314075 31736897 ~ 31738196 (+)
map10 NA other downstream 861755 32284577 ~ 32288850 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 1079952 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 1190652 32613474 ~ 32677285 (+)
bcl2l11 bcl2l11 other downstream 1790806 33213628 ~ 33232791 (+)

Expression


Co-expression Network