trnat-ugu_90


Basic Information

Item Value
gene id trnat-ugu_90
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13347561 ~ 13347633 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnat-ugu_90
GGCTCCATAGCTCAGGGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCAAATCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-ugu_90 True 73 tRNA 0.58 1 13347561 13347633

Neighbor

gene id symbol gene type direction distance location
frmd6 frmd6,LOC107654939,LOC107736757,LOC107683538 coding upstream 48542 13271416 ~ 13299019 (+)
tmx1 tmx1,txnd1,LOC107705366,LOC107654918,LOC107602932,LOC107736746 coding upstream 144366 13197150 ~ 13203195 (+)
atl1 atl1,LOC107705445,LOC107736665,LOC107682422,LOC107602974,LOC107553217 coding upstream 279333 13051867 ~ 13068228 (+)
atp5s atp5s coding upstream 367994 12973611 ~ 12979567 (+)
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding upstream 642373 12696124 ~ 12705188 (+)
abcb10 abcb10,LOC102798660 coding downstream 34240 13381873 ~ 13393037 (+)
LOC103031709 acta1,act2,LOC108430668,LOC102689871 coding downstream 50148 13397781 ~ 13401639 (+)
LOC103032026 ccsap coding downstream 55975 13403608 ~ 13409451 (+)
pdcd2 pdcd2 coding downstream 114696 13462329 ~ 13464974 (+)
LOC103035225 rab1a,LOC103035225,LOC107601860,LOC107676578,LOC107666439,LOC105005759,LOC107725478 coding downstream 137887 13485520 ~ 13494058 (+)
G216100 NA non-coding upstream 45514 13301385 ~ 13302047 (+)
G216073 LOC108263287,LOC108263288 non-coding upstream 109708 13205309 ~ 13237853 (+)
G216077 NA non-coding upstream 122456 13224809 ~ 13225105 (+)
G216064 pygl,LOC104938237 non-coding upstream 204170 13139244 ~ 13143391 (+)
G216059 NA non-coding upstream 215041 13127926 ~ 13132520 (+)
G216138 tbp,LOC107676577,LOC107725488,LOC107666436 non-coding downstream 118077 13465710 ~ 13471415 (+)
G216139 NA non-coding downstream 125746 13473379 ~ 13474113 (+)
G216141 NA non-coding downstream 127503 13475136 ~ 13475336 (+)
G216143 NA non-coding downstream 132111 13479744 ~ 13480026 (+)
G216153 NA non-coding downstream 161229 13508862 ~ 13510402 (+)
trnay-gua_11 NA other upstream 31399 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 32361 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 35074 13308037 ~ 13312487 (+)
G216053 nin other upstream 243519 13091746 ~ 13104042 (+)
G215886 NA other upstream 631656 12710638 ~ 12715905 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 131543 13479176 ~ 13484371 (+)
spef1 spef1 other downstream 392880 13740513 ~ 13750306 (+)
gsto1 gsto1 other downstream 994599 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 1374767 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3656908 17004541 ~ 17007537 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnat-ugu NA coding NC_048566.1 CM023220.2 14408666 ~ 14408738 (+)
rainbow trout (Oncorhynchus mykiss) trnat-ugu-39 NA coding NC_048583.1 CM023237.2 1579545 ~ 1579617 (-)
eurasian perch (Perca fluviatilis) trnaa-ugc NA non-coding NC_053113.1 CM020910.1 43527854 ~ 43527925 (-)
eurasian perch (Perca fluviatilis) trnat-ugu_7 NA coding NC_053134.1 CM020931.1 1197556 ~ 1197628 (+)
striped catfish (Pangasianodon hypophthalmus) trnat-ugu NA coding NC_047597.1 CM018543.1 12667814 ~ 12667886 (+)
tiger barb (Puntius tetrazona) trnar-ccu_45 NA misc NC_056707.1 CM032076.1 5441891 ~ 5441963 (+)
tiger barb (Puntius tetrazona) trnat-ugu NA coding NC_056699.1 CM032068.1 21884118 ~ 21884190 (-)
mexican tetra (Astyanax mexicanus) trnat-ugu NA coding NC_035899.1 CM008302.1 6650705 ~ 6650777 (+)