trnay-gua_11


Basic Information

Item Value
gene id trnay-gua_11
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13316075 ~ 13316162 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnay-gua_11
CCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTaggtcgctggttcgaatccggCTCGAAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnay-gua_11 True 73 tRNA 0.55 2 13316075 13316162

Neighbor

gene id symbol gene type direction distance location
frmd6 frmd6,LOC107654939,LOC107736757,LOC107683538 coding upstream 17056 13271416 ~ 13299019 (+)
tmx1 tmx1,txnd1,LOC107705366,LOC107654918,LOC107602932,LOC107736746 coding upstream 112880 13197150 ~ 13203195 (+)
atl1 atl1,LOC107705445,LOC107736665,LOC107682422,LOC107602974,LOC107553217 coding upstream 247847 13051867 ~ 13068228 (+)
atp5s atp5s coding upstream 336508 12973611 ~ 12979567 (+)
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding upstream 610887 12696124 ~ 12705188 (+)
trnat-ugu_90 NA coding downstream 31399 13347561 ~ 13347633 (+)
abcb10 abcb10,LOC102798660 coding downstream 65711 13381873 ~ 13393037 (+)
LOC103031709 acta1,act2,LOC108430668,LOC102689871 coding downstream 81619 13397781 ~ 13401639 (+)
LOC103032026 ccsap coding downstream 87446 13403608 ~ 13409451 (+)
pdcd2 pdcd2 coding downstream 146167 13462329 ~ 13464974 (+)
G216100 NA non-coding upstream 14028 13301385 ~ 13302047 (+)
G216073 LOC108263287,LOC108263288 non-coding upstream 78222 13205309 ~ 13237853 (+)
G216077 NA non-coding upstream 90970 13224809 ~ 13225105 (+)
G216064 pygl,LOC104938237 non-coding upstream 172684 13139244 ~ 13143391 (+)
G216058 NA non-coding upstream 187117 13128294 ~ 13128958 (+)
G216138 tbp,LOC107676577,LOC107725488,LOC107666436 non-coding downstream 149548 13465710 ~ 13471415 (+)
G216139 NA non-coding downstream 157217 13473379 ~ 13474113 (+)
G216141 NA non-coding downstream 158974 13475136 ~ 13475336 (+)
G216143 NA non-coding downstream 163582 13479744 ~ 13480026 (+)
G216153 NA non-coding downstream 192700 13508862 ~ 13510402 (+)
trnay-gua_10 NA other upstream 875 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 3588 13308037 ~ 13312487 (+)
G216053 nin other upstream 212033 13091746 ~ 13104042 (+)
G215886 NA other upstream 600170 12710638 ~ 12715905 (+)
G215834 NA other upstream 1109911 12205501 ~ 12206164 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 163014 13479176 ~ 13484371 (+)
spef1 spef1 other downstream 424351 13740513 ~ 13750306 (+)
gsto1 gsto1 other downstream 1026070 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 1406238 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3688379 17004541 ~ 17007537 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnay-gua_62 NA coding NC_053134.1 CM020931.1 23887337 ~ 23887424 (+)
tiger barb (Puntius tetrazona) trnac-gca_56 NA coding NC_056709.1 CM032078.1 1124291 ~ 1124362 (-)
tiger barb (Puntius tetrazona) trnay-gua_46 NA coding NW_025047891.1 JAEQBD010000236.1 212911 ~ 212998 (-)