CI01000009_02975388_02982670


Basic Information

Item Value
gene id CI01000009_02975388_02982670
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2975388 ~ 2985391 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02975388_02982670.mRNA
AGTGCAGCACAGGTCACTGCTTTACTTCACTTCTAGGTGAAGTCAAGTGAAAAATAGATGGTTTATTCATTAATTTTTTTCATTTTTATATGCCTTACAATAACGCAGTCTAACCTATAGGTAAATGATATGGGCTGAAGGTTTGAACCCTGTAAGGGTCGATGTATAATAGGGGAATGGGTGCTATAGGTAGCCTTTAAGTGAACTGCAACTCACTGGAAATCGTCAGTTAAATGACTGTAATGAATAGCATATTTCAGTACGCACAATTAGAAACAAATCCCGAAAATGGAAAATGAAAAAAACTAAAAGTAGGTCTATGTCAATAGCTAAACTATTTTACAACGTAGCCTATGCTTTGTCTAATACATTATTTATTTTGATGGGGCAATAAACAATATCACCGCCATTCAGAAAAATGATTCATAGTTGACACACAGACTTGAATAAGAGACTGTTAAATGTACTCCGCTTCCTACAATAATTTAACCATGCTTTCCTGTGGTCGGATGAGTAGACTAAAGAAAACTTCCAGAATTGACTCCCACATATTGATGTTTTCCTTTTATCTTAAATAATCTCTCGTGTTCTTTTCGTACAGCTGTGAATCAGCGCAAGTAAAAACACAAGCAGTTTTAACATGCACTATGAATCACGCGCGTGACTAACGCGACAGGAATAAACTTTAATTCTTTCAGTTTCAAATGCAGTCTTTTAAGTCTCACGACTGACATCTATTGCCCGCTTTGTGTCACAGTTTCTCTGATGAAAAGTGCAATAGGCTATTGGCTATACTGGGATTTTTTTTTAATAGGCCATATGTAGTAGCCTAGGTCTATTATGCAACGATAAACCTTTGCTCTGGTCACTTATTTTATCCCACTCATATGTAGTTGGAGTGGTTAAAAGAAGTAAATTAATTCACCTGTCATGTGAATTCAAGTGTCATTTTTTGTTTCAAATTATGATTCCTTTTCTACTGAGAAAAAAAGCACTGTAGACATTAAATATTTGCTTCTCTTGAATTTGTTCTAGATCACATGTTATGTTTCTTGGAAGCCTGTCTGAAAACTTTCCTTAGTACCTTACAAAAACACCGTCTGTCTGAGCGCATACTGCAGAAATAGTAGGCTAAGCATAAGTATAGTCCAACAACACAGTTAAGCTTCAGTATTTAAATATGATCAAACATACAAAAAGATGTCTCGTGATATTTTTGATGTTATTATTTTTAATAGTTTTTTTCTTCTCACATCAGTTTATGTGAACTTTAAAATGCAATCTGTAAAATGTACACTACCAGTCAAAAGTTTGGAAACGTTACTATTTTTAATGTTTATTTTTAGGCTGCATTTATTTCATAATAAATACAGAAAAAATAATAATATTGTGAAATATTATTACAATTTAAAATTATGGTTTTCTATTTTAATATACTTTAAAATATAATTTATTTCTGTGATGCAAAGCTTAATTGTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTGTAATATGCTGATTTATTATCAATGTTGGAAACAGTTGTGCTGCTTAATATTATTTTATAACCTGTGATACTTTTTCAGGATTCTTTGATGAATAAAAAGTTGACAAATATCAGCATTTATTTAAAATAAAAATCTTTTGTAACAATATACACTACCGTTCAAAAGTTTGGGGTCAGTAATTTTTTTTCTTTCTTTTTTTTTTGAAAGAAATTAATACTTTTATTCAGCACGGATGTGTTAAATTCATAAAAAGTGATTTATATTGTTAGAAAAGATTTATATTTTGAATAAATGCTGTTCTTTTTAACCTTTTATTCATCAATGAATCCTGAAAAAAGTATCACGGGTTCCAAAAAAATATTAAGCAACACAACTGTTTTCAACATTGATAATAACTGAGTATCAAATCAGCATATTACAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGCATCACAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTTCTGTATTTATTATGAAATAAATGCAGCCTTAATGAGCATAAGAGACTTCGTCCAAAAACATTAAAAATAGTAATGTTTCCAAACTTTTGACTGGTAGTGTAAGATTGGATTAATCAAGTTGTGCAGGTACAATCAATAATATAGCCTACACAAAATAGATTAAAATCACCATTTCAGAAGAACTCAATGAGTGTGACAGGGTTTGTATGTACAGCTTTGAAATTAGGCTGTATGCAGGAGGAAGTATCACCATGACGACAAGGGTTATCTTTGTTCTCCATGTGCTTCCTGTCTAAGTGAAGTGTTTAGTGGGGATATAACAGATACAGTTAACACTGAAGAGGTGCCAGTTGATTGTCTAATGTGCTGGTGTGCTCATGTTAAGGCTGCAGGGATTTTAACCATACTGGGCTGCCACTATGGTGCTGTAATTCTGGGGTTTATGATAGAGTGATGGCAGGGATATGGTCAGAGGTCTGGACGTTGTACTTCATACTGGCTCTTGGTACTCCAGACCCCTCACCAGCACCCCAAGAGAAATCCCGTGACTTCAGAAGGATCCTCCTAGGTTTGGATAAATGCAATGCCTGCATTGGAACATCCATTTGCAAGAAGTTTTTCAAGGATGAAATAAGGTTTGAAAGATGGCTGACGGCTCAGTCTAATCTCTCCTCAGCAGATGTGCGCTCATATGAGGGAAACTATACAGACAGCACAGCGGGCTGGAGACCTGTGGTGCTGTCCCAATTGATGTCTCCTCACCTGCACGAGATATCAGACAATAGCATTTGCACCTCAGCAGGCAAAGGGAAATCCTGCAGCATTGAAGCCGTCCTCAGGGCCACTTCACGCTTCCAAAGTTGGGTTCGCTCCAACATACTGCTTCCCAGCATGGTGAAGGGTCTGGTCACCCCGATGCTGCGCTGCCCATCTCAGAGGTTGCTGGACCGTATTGTGCGACGCTACTTCGAAGTGACTGATGTGGGCAGCATGCAGATGAAGCACTTCAGTGAAAAGGACAAACTCAGACTTCTTTACACTCTGGCTGTTAATCAACAGCCCCTTATACTGCAGATGTTTCCAGGCACTGAGGGCTGGCCCTTCCTCCGCTACCACGGCTCCTGTGGAAGGATGATGGTGTGTGCAGGGAGCAGACCCCTCAGGAGCCTGTTTTCCTCTCCATTAGAGCGCCGCGCAGACATCGCCTACCAGCTCCTTCACACCACCCAGAGCCTGAGCTCCAACAGCCTCCAGTTCAGCCTCTTCTACACCAGTGTCTCAGAGGACATGTTTGGCACCTTGGATGATAGCAGGGTCTTCATTGTGGATGCCAGTACCATAGGGATCATCGATTTGCAGGAAGGACATCCTCCTGATGAAGACTTGTTACCAGAACACCTTGATGTCTTCTCCTGTCTGAGCGGATCTTGTACGAGAACTCCCCCATGTGAGACTGTCCGAGCCACACAGAGTTTTATCTTACTATGCAAACATGTCCTTAACAAACTGCTCATCCCTAATGATGTGCAGTCAGGCCAGCTTCCCAGAGCAGCAGTCAATGAGCTCGCTGTCTGCGCAGACCAATCTCAGTCTGACCAAAGAATAGTCACTGCCATCCAAACCTTAAAAGACATTTTACAGACACTAAGGGCATGCAGCGCTCTCTATGGATACAG
>TU59873
TGCTGATTTATTATCAATGTTGGAAACAGTTGTGCTGCTTAATATTATTTTATAACCTGTGATACTTTTTCAGGATTCTTTGATGAATAAAAAGTTGACAAATATCAGCATTTATTTAAAATAAAAATCTTTTGTAACAATATACACTACCGTTCAAAAGTTTGGGGTCAGTAATTTTTTTTCTTTCTTTTTTTTTTGAAAGAAATTAATACTTTTATTCAGCACGGATGTGTTAAATTCATAAAAAGTGATTTATATTGTTA

Function

GO:

id name namespace
GO:0009966 regulation of signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02975388_02982670.mRNA False 3944 mRNA 0.36 5 2975388 2985391
TU59873 True 263 lncRNA 0.24 1 2983595 2983857

Neighbor

gene id symbol gene type direction distance location
CI01000009_02916137_02917550 FUNDC1 coding downstream 57838 2915641 ~ 2917550 (-)
CI01000009_02904768_02914992 EFHC2 coding downstream 60141 2904691 ~ 2915247 (-)
CI01000009_02885473_02893975 NA coding downstream 81413 2883688 ~ 2893975 (-)
CI01000009_02844171_02861309 MAOB coding downstream 114079 2843011 ~ 2861309 (-)
CI01000009_02786421_02791586 NA coding downstream 182953 2786311 ~ 2792435 (-)
CI01000009_03006152_03007243 NA coding upstream 19995 3005386 ~ 3007855 (-)
CI01000009_03009238_03025860 NA coding upstream 22969 3008360 ~ 3025937 (-)
CI01000009_03140599_03143635 SLC35A5 coding upstream 155208 3140599 ~ 3143635 (-)
CI01000009_03171440_03194494 DCAF6 coding upstream 186049 3171440 ~ 3195145 (-)
CI01000009_03226613_03234223 ME3.L, ME3 coding upstream 240377 3225768 ~ 3234223 (-)
G52489 NA non-coding downstream 62043 2913118 ~ 2913345 (-)
G52488 NA non-coding downstream 62846 2912305 ~ 2912542 (-)
G52478 NA non-coding downstream 151460 2822962 ~ 2823928 (-)
G52469 NA non-coding downstream 164054 2811045 ~ 2811334 (-)
G52406 NA non-coding downstream 396410 2574486 ~ 2578978 (-)
G52553 NA non-coding upstream 10258 2995649 ~ 2995905 (-)
G52503 NA non-coding upstream 20173 3027695 ~ 3033677 (-)
G52556 NA non-coding upstream 60498 3045889 ~ 3046097 (-)
G52557 NA non-coding upstream 63707 3049098 ~ 3049653 (-)
G52566 NA non-coding upstream 85770 3071161 ~ 3071388 (-)
G52410 NA other downstream 412855 2551724 ~ 2562533 (-)
G52098 NA other downstream 1567761 1401932 ~ 1407627 (-)
CI01000009_03261739_03262843 NA other upstream 275812 3261038 ~ 3262843 (-)
G52828 NA other upstream 1232029 4217420 ~ 4231469 (-)
G53515 NA other upstream 2517004 5502395 ~ 5505248 (-)
G55814 NA other upstream 5440430 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 5872761 8856310 ~ 8860563 (-)

Expression


Co-expression Network