LOC111193046


Basic Information

Item Value
gene id LOC111193046
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4979467 ~ 4980022 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC111193046
ATGACTGAGAGCTGCTACAGCAACTTTTCACCCACAGCAGCCATGACTTTAATCCCCATTATCGAGACCCTGATCTTCTGCTCTCAAGAGTCCATAGGTCAGGTGACTGTGACTCAGAGTCCTGAAGACAAATCTGCCCTGCAAGGAGACACCGTCACCATCCGCTGCAGGACCAGCACTGCTGTTTTCTACTACAGCTCATACGGCCACTTCTTACACTGGTATCAGCAAAAACCAGGAGAAGTTCCTaaactgattattaaaaaaGTCACAGAGTTAGAATCTGGTTTTGCAGCTCGTTTCAGTGGTAGTGGATCTGGATCTGACTTCACTCTGACCATCAGTGGAGTCCAGCCTGAAGATGCTGCAGATTATTACTGCCAGAGTCGTCATCATATCAGCAGCACCAACCTGTTCACACAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC111193046 True 426 V_segment 0.47 2 4979467 4980022

Neighbor

gene id symbol gene type direction distance location
LOC111193076 NA coding upstream 22441 4956279 ~ 4957026 (+)
dnajc8 dnajc8,LOC102775708 coding upstream 24578 4943206 ~ 4954889 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding upstream 44402 4929177 ~ 4935065 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding upstream 94979 4857848 ~ 4884488 (+)
dpy19l4 dpy19l4 coding upstream 640385 4306665 ~ 4339082 (+)
cfap69 cfap69 coding downstream 68484 5048506 ~ 5067507 (+)
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding downstream 88879 5068901 ~ 5082606 (+)
LOC103040455 sept8,LOC108435605,LOC103023804 coding downstream 111856 5091878 ~ 5117839 (+)
ccng1 ccng1,LOC107745080 coding downstream 143932 5123954 ~ 5130557 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding downstream 163743 5143765 ~ 5173256 (+)
G71246 NA non-coding upstream 10548 4963971 ~ 4968919 (+)
G71244 NA non-coding upstream 37350 4941409 ~ 4942117 (+)
G71215 NA non-coding upstream 135254 4744153 ~ 4844213 (+)
G71209 NA non-coding upstream 300745 4678331 ~ 4678722 (+)
G71201 NA non-coding upstream 357227 4621818 ~ 4622240 (+)
G71256 NA non-coding downstream 10830 4990852 ~ 4993179 (+)
G71260 NA non-coding downstream 21069 5001091 ~ 5043758 (+)
G71287 nudcd2 non-coding downstream 153713 5133735 ~ 5137567 (+)
G71294 NA non-coding downstream 225194 5205216 ~ 5207077 (+)
G71304 NA non-coding downstream 315656 5295678 ~ 5298321 (+)
G71249 NA other upstream 11560 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 57647 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 537536 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1404709 3409670 ~ 3574758 (+)
G70846 NA other upstream 1600857 3377684 ~ 3378610 (+)
G71414 gstp1 other downstream 519886 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 692696 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 891068 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1545619 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1901565 6881587 ~ 6885541 (+)

Expression


Co-expression Network