LOC111193076


Basic Information

Item Value
gene id LOC111193076
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4956279 ~ 4957026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC111193076
ATTTACATTAGCAGAAACATGCTTCAGTGCTCTGGGAGTGTTTATAGTCCTGTGAGTTTAACACTTCATGACTGAGAGCTGCTACAGCAACTTCTTCACCCACAGCAGCCATGACTTTAATCCCCATCTTCATCTGGACCCTGATCTTCTGCTCTCAAGAGTCCATAGGTCAGGTGACTGTGACTCAGAGTCCTGCAGTGAAATCTGCTCTTCCAGGAGACACCGTCACCATCAGCTGCAGGACCAGTCCTGCTGTTTACAGTGACTCAAATGGTCAAAGATTACACTGGTATCAGCAGAAACCTGGAGAAGCTCCTAAACTCCTGATTAAACTTGTGAATCAGCTTCAGTCTGGTTTTGCAGCTCGTTTCAGTGGTAGTGGATCTGGATCTGACTTCACTCTGACCATCAGTGGAGTCCAGTCTGAAGATGCTGCAGATTATTACTGTCAGAGTGCTCATGTTATCAGCAGCACCGCTCTGTTCACACAGTGATATAACGCCGTACAAAAACCTCCGTCACTCAGTCCGGCTGCACAGAGACTGCACTGCTGCAGTGGGATCTCCTGCAGGTGCTGAGTTGGAGGAAGTGAaacagcacaatcacacactaaCTTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC111193076 True 619 V_segment 0.47 2 4956279 4957026

Neighbor

gene id symbol gene type direction distance location
dnajc8 dnajc8,LOC102775708 coding upstream 1390 4943206 ~ 4954889 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding upstream 21214 4929177 ~ 4935065 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding upstream 71791 4857848 ~ 4884488 (+)
dpy19l4 dpy19l4 coding upstream 617197 4306665 ~ 4339082 (+)
LOC103045063 LOC108435620 coding upstream 740563 4132022 ~ 4215716 (+)
LOC111193046 NA coding downstream 22441 4979467 ~ 4980022 (+)
cfap69 cfap69 coding downstream 91480 5048506 ~ 5067507 (+)
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding downstream 111875 5068901 ~ 5082606 (+)
LOC103040455 sept8,LOC108435605,LOC103023804 coding downstream 134852 5091878 ~ 5117839 (+)
ccng1 ccng1,LOC107745080 coding downstream 166928 5123954 ~ 5130557 (+)
G71244 NA non-coding upstream 14162 4941409 ~ 4942117 (+)
G71215 NA non-coding upstream 112066 4744153 ~ 4844213 (+)
G71209 NA non-coding upstream 277557 4678331 ~ 4678722 (+)
G71201 NA non-coding upstream 334039 4621818 ~ 4622240 (+)
G71194 NA non-coding upstream 444882 4510801 ~ 4511397 (+)
G71248 NA non-coding downstream 1130 4958156 ~ 5006225 (+)
G71246 NA non-coding downstream 6945 4963971 ~ 4968919 (+)
G71256 NA non-coding downstream 33826 4990852 ~ 4993179 (+)
G71260 NA non-coding downstream 44065 5001091 ~ 5043758 (+)
G71287 nudcd2 non-coding downstream 176709 5133735 ~ 5137567 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 34459 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 514348 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1381521 3409670 ~ 3574758 (+)
G70846 NA other upstream 1577669 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 1663804 3121918 ~ 3292475 (+)
G71249 NA other downstream 6676 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 542882 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 715692 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 914064 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1568615 6525641 ~ 6538794 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) LOC117598158 NA non-coding NC_047603.1 CM018549.1 6867836 ~ 6868544 (-)