G74202 (LOC108433646)


Basic Information

Item Value
gene id G74202
gene name LOC108433646
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16219096 ~ 16222273 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU100011
CACCTTTCACTTTATGAATTAACCAAACAAGAGCCTTGTGAATAATTCAGTTTAGACTTCAGTGTGTCATTCTTGAGGGTTCTTGTaagaaagctgattggctgtctcagaCAACAGCCAATCAATGTGAAGTAGTGGATAAGGAAAAGACGATAAAAAAGTGGGCAGAGACGATGGGAATACGCCAAACAAATATAACCACATTTATTTCGAAAGTATAAAATATCACACTATAAAGGCCACTTTGCAAAGGGTAGTTGAACAActtcaaatatttacacaaactTAGAATACCTTCTCCCTCTCAAGATAGATATCATCCAAGCTCTGTGGCAAACAGAAATGTCATTGTCCCACTTGACCACAGGGATCGGTTGGcaaatatttcaataatttaATGTGATAACAGGAAATGGCAGGAGTTTTGAGGGTTCCTGATTGATTTGCTTTCGTTTATCCATTAGAGGTTGCAGGTATTCCAAATGGTTCTTGTTTCAATTCAAAACCAGTGTACAGGCACAGCTTGACATCAAATTAACAGGCACTGGATGCCCTCGAACTGGGAAATtctcagagaaagaaaaagagttaAAGAAATTTGCAGTTCACATTCTATACAATGGCACCAGTCAGGCCTCTAGAGCTCCTGGAAAAAGGAGGCTCCTGGGGTTCTCTCTCACAAGCAGAGCAGCCCGTACCCGAGATCCATCCGGCACTACAGGCAAATCTGGCTCACCATCATCTTTGTAGGCCCCCTCTCTCTGTTTTGATGTTGATGTACGTTAGTTGTCGTTCGTCCTGTACACAACCGTTGACGTGGTGTCAGATTGAGGTAGAACCGTTGTACCAAAAACTTAGCTAGAATAATTTTCAACCTAAGAAGTAACAGTCACATCAACCGACTCGGCAGagtggatgaaaaaaaaaaaaataataatagaaaagcaAAATTCACATTCAACCCACGTATTTCAACTACAACTACAATGGCGATCACTGACACACTGGAATATCTGAAGTGTTCCCGAAAAACACATTACTCCCTCTTTTACCCTTCCCTTTCTGAACTCATGGTTGCCTTTATTCACAGATTCACCGATTCCGTGCCTCAGCCCGCCTGAGCCACCGTAGTCTATGCGCTTTCTGTCTCACCAGGGATATCCTCCTTAAAGACAGCTCAGGGGGCTCAGCATCAGAGGGCTTCCCTAACTCACACTCGcaatgcacacactcacactcacacttccacacccacacacacaatgtaATCCAACAATAAGGATTCAACCCTCACACACAAGTTAGATGATGcggacacactgacacacaccagTCGCGCACTGATGCTCCCTCTcacttcagtgtgtgtgtgaaaggctGTGTCCCTCTAGCTGCTAAGCTGGGCCTGCTCTGCTTTGTGTGTCTCTCCTGAAGGCTGAAATGGAGGAGCGGTACACTTTGCACTGGAGTGagttgactgactgactgactgactgactccgGCGGGGACTGGCTAGGCTCTGATCATCCAGAGCCATCCCTGTGGACTAGGACCAGCCGCTGGCCGCCATGCCACCCGGTCCCCCAGAGCCTTTCTGGCTAATAATGCTCTCTGTGGATTTTAGCAGTCTCTCCAGGCAGGGGGCGTTGATCTTGCCCGGAGGAGGCCGACTGGGCATCGAGTCCGTCTGAAGATGCGGCGTGTCTGTGCTAGAGGACACAGAGTTGTCCTGTGTTACGTCCTTGTTTCTGTGGGCTGTGAGAAAGTTCCGGACTGTTCCCTGGGCCTGCTCGGCTGTTGGCGAGCAGATCGGAGACGTGTGGAGCCATTTCAGGTTGGTGGCAGAGTAGGGTCCTGGGGGGGTGAGGTCACTGACCCGCATGGCCTTGGCGCCCATGTGAGGAGCACTGCTTGATGCAGGGTTAACCAGACCGGTGGACATGGGGGCTGGAGCAGAGGATGACTGTGACAACTTGGGTTTCTTCAGTGGGGCGGTCTCTTGCGTCAGCTCCATGGCAGTGGCTTGTTGGTGAGGTTTTATGTGAGGGAACCAGCTCTTCAGCATTTCCTCCATTTTCAGAATGATGTTGACATACCGCTCACTGCATGGCACAGGAAGGATATGATTTAGCAGGAGCACCCACTCATGACGagaattgaaaaagaaaaaaacatccacGTGGCATGGGCTGAAGCGTGCTCTGCCTCAGACAAATATGTGTGGCAGGAACACACGATCTGCTCTGAGTAAGTGCGAAAGTCTAGTCTCTCTCTTGCTGACCTCACGGGATGCAAAAGAGGCACTCACCACATATAGAGCACACTGTGCTCCAGTCTAGAACACGTCCTAGGC

Function

NR:

description
PREDICTED: circadian-associated transcriptional repressor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100011 True 2354 lncRNA 0.48 2 16219096 16222273

Neighbor

gene id symbol gene type direction distance location
ca12 ca12 coding downstream 133462 16055056 ~ 16085634 (-)
man2c1 man2c1,LOC107682572 coding downstream 167519 16040065 ~ 16051577 (-)
sema7a NA coding downstream 192195 16014365 ~ 16026901 (-)
islr2 islr2,LOC107662462 coding downstream 234978 15979981 ~ 15984118 (-)
ccdc33 ccdc33 coding downstream 362435 15839686 ~ 15856661 (-)
dapk2 dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496,LOC107573357 coding upstream 35065 16257338 ~ 16313325 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding upstream 95611 16317884 ~ 16350164 (-)
cib2 cib2,LOC103027299,LOC107573330,LOC107752320,LOC101476243 coding upstream 162276 16384549 ~ 16414345 (-)
acsbg1 NA coding upstream 225223 16447496 ~ 16457754 (-)
LOC103042575 LOC108433637 coding upstream 267374 16489647 ~ 16528087 (-)
G74199 NA non-coding downstream 3571 16202524 ~ 16215525 (-)
G74091 usp3,LOC107659494 non-coding downstream 110371 16103616 ~ 16108725 (-)
LOC111193099 NA non-coding downstream 265283 15853302 ~ 15953813 (-)
G73910 NA non-coding downstream 574844 15643821 ~ 15644252 (-)
G73877 svip non-coding downstream 641598 15572334 ~ 15577498 (-)
G74203 NA non-coding upstream 30219 16252492 ~ 16252752 (-)
G74205 NA non-coding upstream 63955 16286228 ~ 16292019 (-)
G74211 NA non-coding upstream 94672 16316945 ~ 16321653 (-)
G74265 NA non-coding upstream 285731 16508004 ~ 16508462 (-)
G74285 NA non-coding upstream 418569 16640842 ~ 16641656 (-)
LOC103046265 pkp3 other downstream 438418 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 804483 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 1004812 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 1421813 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1673560 14542196 ~ 14545536 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 244816 16467089 ~ 16470323 (-)
nrg4 NA other upstream 1654753 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 1760474 17982747 ~ 18029747 (-)
G74791 NA other upstream 2716901 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 2770395 18992668 ~ 19008366 (-)

Expression


Co-expression Network