LOC103041134 (rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845)


Basic Information

Item Value
gene id LOC103041134
gene name rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16467089 ~ 16470323 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU100056
CTTCAATGTGATGGGGAGTTTATGAAGCGCGCGTGTCAACCCGGAGCTAGCTCAGTGTGTTTCAGGTACCGAGGAGAGCAGACCGACACTCTACGCAGGAGAAAATCCCCCGGTTGTGAAAATGCCTCTGGCCATAGATCTGCTGAACCCCTCCTTTGATTTGGAGAGAAGACGACACAAGAAGAAGAGGCTTGTGCAGAGTCCAAATTCCTACTTCATGGATGTTAAGTGCCCAGGTTGTTATAAAATCACAACAGTCTTCAGCCATGCCCAGACAGTGGTGTTGTGTGTTGGGTGCTCGACAGTGCTCTGCCAGCCCACAGGAGGGAAAGCCAGGCTGACAGAGGGCTGTTCTTTCAGAAGAAAGCAACACTGAAGAGAATATTGGAAAATGGACTATTTAAGAAAGAAATTGTTCCAGTTTCTTTATCTTTTCATTGATTGCAATGAGTGATGTTGTGACTAAAGTAATTGCATTAAAGGTTATTTCTACCTTACCACTTTCTGAATAAAGGACTAGCATTACACCTC
>XM_007246480.3
TTTATGAAGCGCGCGTGTCAACCCGGAGCTAGCTCAGTGTGTTTCAGGTACCGAGGAGAGCAGACCGACACTCTACGCAGGAGAAAATCCCCCGGTTGTGAAAATGCCTCTGGCCATAGATCTGCTGAACCCCTCCTTTGATTTGGAGAGAAGACGACACAAGAAGAAGAGGCTTGTGCAGAGTCCAAATTCCTACTTCATGGATGTTAAGTGCCCAGGTTGTTATAAAATCACAACAGTCTTCAGCCATGCCCAGACAGTGGTGTTGTGTGTTGGGTGCTCGACAGTGCTCTGCCAGCCCACAGGAGGGAAAGCCAGGCTGACAGAGGGCTGTTCTTTCAGAAGAAAGCAACACTGAAGAGAATATTGGAAAATGGACTATTTAAGAAAGAAATTGTTCCAGTTTCTTTATCTTTTCATTGATTGCAATGAGTGATGTTGTGACTAAAGTAATTGCATTAAAGGTTATTTCTACCTTACCACTTTCTGAATAAAGGACTAGCATTACACCTCTTTGGAAtgcctttattaatttaaccaTATGTGTGTCTTTCCAAATCTGGCTATGTTTTAGGTAGATATCTTTGCTTTGTATAAGAAGCATCATTTATGTCATTCATACTATTTGTAGTGCTGGTCAGTGACACTTTCGAGACCAACATAATGTCACAACAGGAAAGAGCAAGATGAAACTTAAAATCTCCTTTGATATTATGCTGACACTTTAAACTGCATATTTTTTCAATGGAAATACTTATTCaaaaatttttataattcaaattttAGCCATGCTATCTAACTTCTTTCTGAACAAACTTCTTCCTGATTAAGAAATGCTGCATACTGGAAAGTTACTGGAACAATGCCAAATACTATTGTGGTTAGCAAAAATAGACAAGATAGTTTGCAttcaaatgaaatgaaacaatACTGACTTGATGGCTAATGGCACTGACATCTCTGATAGTGGCACCTCTAAAACTTAAAAGCATCCTGGAATTAATAAAGAGTTCTAGAAAACACCTAA

Function

symbol description
rps27l Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS27L (ribosomal protein S27 like).

NR:

description
40S ribosomal protein S27-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02978 RP-S27e, RPS27; small subunit ribosomal protein S27e

RNA

RNA id representative length rna type GC content exon number start site end site
TU100056 False 531 lncRNA 0.45 4 16467603 16470323
XM_007246480.3 True 1027 mRNA 0.39 4 16467089 16470305

Neighbor

gene id symbol gene type direction distance location
acsbg1 NA coding downstream 9335 16447496 ~ 16457754 (-)
cib2 cib2,LOC103027299,LOC107573330,LOC107752320,LOC101476243 coding downstream 52744 16384549 ~ 16414345 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding downstream 116925 16317884 ~ 16350164 (-)
dapk2 dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496,LOC107573357 coding downstream 153764 16257338 ~ 16313325 (-)
ca12 ca12 coding downstream 381455 16055056 ~ 16085634 (-)
LOC103042575 LOC108433637 coding upstream 19324 16489647 ~ 16528087 (-)
otud7a otud7a,si:dkey-37f18.2,LOC107715690,LOC107752330,LOC107659507,LOC107550219,LOC107698115,LOC107598848,LOC108275340 coding upstream 147828 16618151 ~ 16738665 (-)
bnip2 bnip2,LOC107703138 coding upstream 344593 16814916 ~ 16829981 (-)
LOC103044821 anxa2,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215 coding upstream 488251 16958574 ~ 16965560 (-)
ice2 NA coding upstream 496459 16966782 ~ 16988490 (-)
G74211 NA non-coding downstream 145436 16316945 ~ 16321653 (-)
G74205 NA non-coding downstream 175070 16286228 ~ 16292019 (-)
G74203 NA non-coding downstream 214337 16252492 ~ 16252752 (-)
G74202 LOC108433646 non-coding downstream 244816 16219096 ~ 16222273 (-)
G74199 NA non-coding downstream 251564 16202524 ~ 16215525 (-)
G74265 NA non-coding upstream 37681 16508004 ~ 16508462 (-)
G74285 NA non-coding upstream 170519 16640842 ~ 16641656 (-)
G74286 NA non-coding upstream 189180 16659503 ~ 16690357 (-)
G74295 NA non-coding upstream 272737 16743060 ~ 16747522 (-)
G74306 NA non-coding upstream 300119 16770442 ~ 16786039 (-)
LOC103046265 pkp3 other downstream 686411 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 1052476 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 1252805 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 1669806 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1921553 14542196 ~ 14545536 (-)
nrg4 NA other upstream 1406703 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 1512424 17982747 ~ 18029747 (-)
G74791 NA other upstream 2468851 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 2522345 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 2600615 19070938 ~ 19072888 (-)

Expression


Co-expression Network